ukb_sleep_prediction/pyproject.toml at main · juaml/ukb_sleep_prediction · GitHub

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[project]
name = "ukb_sleep_ml"
description = "UKB Sleep Prediction project"
readme = "README.md"
requires-python = ">=3.8"
license = {text = "AGPL-3.0-only"}
authors = [
    { name = "Fede Raimondo", email = "f.raimondo@fz-juelich.de" },
]
maintainers = [
    { name = "Fede Raimondo", email = "f.raimondo@fz-juelich.de" },
]
keywords = [
    "machine-learning",
]
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Science/Research",
    "Intended Audience :: Developers",
    "License :: OSI Approved",
    "Natural Language :: English",
    "Topic :: Software Development",
    "Topic :: Scientific/Engineering",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
]
################
# Tool configs #
################

[tool.codespell]
skip = "*/auto_examples/*,*.html,.git/,*.pyc,*/_build/*,*/api/generated/*.examples,julearn/external/*"
count = ""
quiet-level = 3
ignore-words = "ignore_words.txt"
interactive = 0
builtin = "clear,rare,informal,names,usage,code"

[tool.ruff]
line-length = 79
extend-exclude = [
    "__init__.py",
    "docs",
    "examples",
    "external",
]

[tool.ruff.lint]
select = [
    # flake8-bugbear
    "B",
    # flake8-blind-except
    "BLE",
    # flake8-comprehensions
    "C4",
    # mccabe
    "C90",
    # pydocstyle
    "D",
    # pycodestyle errors
    "E",
    # pyflakes
    "F",
    # isort
    "I",
    # pep8-naming
    "N",
    # pygrep-hooks
    "PGH",
    # ruff
    "RUF",
    # flake8-type-checking
    "TCH",
    # pyupgrade
    "UP",
    # pycodestyle warnings
    "W",
    # flake8-2020
    "YTT",
]
extend-ignore = [
    # Use of `functools.lru_cache` or `functools.cache` on methods can lead to
    # memory leaks. The cache may retain instance references, preventing garbage
    # collection.
    "B019",
    # abstract class with no abstract methods
    "B024",
    "D202",
    # missing docstring in __init__, incompatible with numpydoc
    "D107",
    # use r""" if any backslashes in a docstring
    "D301",
    # class names should use CapWords convention
    "N801",
    # function name should be lowercase
    "N802",
    # variable in function should be lowercase
    "N806",
    # use specific rule codes when ignoring type issues
    "PGH003",
]

[tool.ruff.lint.isort]
lines-after-imports = 2
known-first-party = ["julearn"]
known-third-party =[
    "numpy",
    "pandas",
    "sklearn",
    "statsmodels",
    "bokeh",
    "panel",
    "param",
    "deslib",
    "pytest",
]

[tool.ruff.lint.mccabe]
max-complexity = 20

## Configure pyright to ignore assignment types until scikit-learn stubs are updated
[tool.pyright]
reportAssignmentType = "none"
exclude = [
    "docs/auto_examples/",
    "*.html",
    ".git/",
    "*.pyc,",
    "*/_build/*",
    "build/",
    ".tox",
    ".eggs",
    "scratch/",  # place to prototype, not to be checked
]