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test: partially fix JATS test
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‎packages/myst-to-jats/tests/notebooks.yml‎

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@@ -18,16 +18,20 @@ cases:
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identifier: nb-cell-0-code
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enumerator: 1
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html_id: nb-cell-0-code
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- type: output
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- type: outputs
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id: T7FMDqDm8dM2bOT1tKeeM
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identifier: nb-cell-0-output
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html_id: nb-cell-0-output
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data:
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- name: stdout
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output_type: stream
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text: abc\n...
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hash: a
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path: files/a.txt
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identifier: nb-cell-0-outputs
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html_id: nb-cell-0-outputs
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children:
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- type: output
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identifier: nb-cell-0-outputs-0
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html_id: nb-cell-0-outputs-0
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jupyter_data:
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name: stdout
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output_type: stream
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text: abc\n...
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hash: a
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path: files/a.txt
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- type: block
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kind: notebook-code
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data:
@@ -43,23 +47,27 @@ cases:
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identifier: nb-cell-1-code
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enumerator: 2
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html_id: nb-cell-1-code
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- type: output
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- type: outputs
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id: uE4mPgSow0oyo0dvEH9Lc
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identifier: nb-cell-1-output
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html_id: nb-cell-1-output
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data:
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- output_type: execute_result
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execution_count: 3
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metadata: {}
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data:
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text/plain:
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content_type: text/plain
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hash: b
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path: files/b.txt
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text/html:
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content_type: text/html
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hash: b
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path: files/b.html
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identifier: nb-cell-1-outputs
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html_id: nb-cell-1-outputs
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children:
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- type: output
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identifier: nb-cell-1-outputs-0
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html_id: nb-cell-1-outputs-0
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jupyter_data:
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output_type: execute_result
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execution_count: 3
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metadata: {}
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data:
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text/plain:
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content_type: text/plain
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hash: b
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path: files/b.txt
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text/html:
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content_type: text/html
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hash: b
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path: files/b.html
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- type: block
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kind: notebook-code
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data:
@@ -75,17 +83,21 @@ cases:
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identifier: nb-cell-2-code
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enumerator: 3
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html_id: nb-cell-2-code
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- type: output
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- type: outputs
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id: 7Qrwdo-_oq5US1Du2KCLU
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identifier: nb-cell-2-output
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html_id: nb-cell-2-output
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data:
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- ename: NameError
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evalue: name 'a' is not defined
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output_type: error
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traceback: \u001b[0;31m------------------------------------------------------...
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hash: c
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path: files/c.txt
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identifier: nb-cell-2-outputs
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html_id: nb-cell-2-outputs
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children:
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- type: output
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identifier: nb-cell-2-outputs-0
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html_id: nb-cell-2-outputs-0
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jupyter_data:
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ename: NameError
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evalue: name 'a' is not defined
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output_type: error
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traceback: \u001b[0;31m------------------------------------------------------...
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hash: c
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path: files/c.txt
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jats: |-
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with MathML3 v1.3 20210610//EN" "http://jats.nlm.nih.gov/publishing/1.3/JATS-archivearticle1-3-mathml3.dtd">
@@ -101,15 +113,15 @@ cases:
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<body>
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<sec id="sec-1" sec-type="notebook-code">
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<code id="nb-cell-0-code" language="python" executable="yes">print('abc')</code>
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<sec sec-type="notebook-output" id="nb-cell-0-output-0">
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<sec sec-type="notebook-output" id="nb-cell-0-outputs-0">
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<alternatives>
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<media specific-use="stream" mimetype="text" mime-subtype="plain" xlink:href="files/a.txt"/>
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</alternatives>
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</sec>
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</sec>
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<sec id="sec-2" sec-type="notebook-code">
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<code id="nb-cell-1-code" language="python" executable="yes">'abc'</code>
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<sec sec-type="notebook-output" id="nb-cell-1-output-0">
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<sec sec-type="notebook-output" id="nb-cell-1-outputs-0">
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<alternatives>
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<media specific-use="text" mimetype="text" mime-subtype="plain" xlink:href="files/b.txt"/>
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<media specific-use="web" mimetype="text" mime-subtype="html" xlink:href="files/b.html"/>
@@ -118,7 +130,7 @@ cases:
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</sec>
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<sec id="sec-3" sec-type="notebook-code">
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<code id="nb-cell-2-code" language="python" executable="yes">a</code>
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<sec sec-type="notebook-output" id="nb-cell-2-output-0">
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<sec sec-type="notebook-output" id="nb-cell-2-outputs-0">
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<alternatives>
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<media specific-use="error" mimetype="text" mime-subtype="plain" xlink:href="files/c.txt">
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<caption>
@@ -151,16 +163,20 @@ cases:
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identifier: nb-cell-0-code
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enumerator: 1
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html_id: nb-cell-0-code
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- type: output
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- type: outputs
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id: T7FMDqDm8dM2bOT1tKeeM
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identifier: nb-cell-0-output
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html_id: nb-cell-0-output
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data:
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- name: stdout
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output_type: stream
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text: abc\n...
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hash: a
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path: files/a.txt
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identifier: nb-cell-0-outputs
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html_id: nb-cell-0-outputs
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children:
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- type: output
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identifier: nb-cell-0-outputs-0
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html_id: nb-cell-0-outputs-0
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jupyter_data:
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name: stdout
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output_type: stream
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text: abc\n...
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hash: a
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path: files/a.txt
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- type: block
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kind: notebook-content
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data:
@@ -212,7 +228,7 @@ cases:
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<body>
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<sec id="sec-3" sec-type="notebook-code">
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<code id="nb-cell-0-code" language="python" executable="yes">print('abc')</code>
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<sec sec-type="notebook-output" id="nb-cell-0-output-0">
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<sec sec-type="notebook-output" id="nb-cell-0-outputs-0">
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<alternatives>
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<media specific-use="stream" mimetype="text" mime-subtype="plain" xlink:href="files/a.txt"/>
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</alternatives>
@@ -251,16 +267,21 @@ cases:
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identifier: nb-cell-0-code
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enumerator: 1
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html_id: nb-cell-0-code
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- type: output
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- type: outputs
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id: T7FMDqDm8dM2bOT1tKeeM
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identifier: nb-cell-0-output
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html_id: nb-cell-0-output
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data:
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- name: stdout
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output_type: stream
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text: abc\n...
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hash: a
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path: files/a.txt
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identifier: nb-cell-0-outputs
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html_id: nb-cell-0-outputs
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children:
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- type: output
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identifier: nb-cell-0-outputs-0
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html_id: nb-cell-0-outputs-0
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jupyter_data:
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name: stdout
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output_type: stream
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text: abc\n...
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hash: a
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path: files/a.txt
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jats: |-
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with MathML3 v1.3 20210610//EN" "http://jats.nlm.nih.gov/publishing/1.3/JATS-archivearticle1-3-mathml3.dtd">
@@ -285,7 +306,7 @@ cases:
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<body>
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<sec id="sec-2" sec-type="notebook-code">
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<code id="nb-cell-0-code" language="python" executable="yes">print('abc')</code>
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<sec sec-type="notebook-output" id="nb-cell-0-output-0">
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<sec sec-type="notebook-output" id="nb-cell-0-outputs-0">
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<alternatives>
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<media specific-use="stream" mimetype="text" mime-subtype="plain" xlink:href="files/a.txt"/>
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</alternatives>
@@ -313,16 +334,20 @@ cases:
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identifier: nb-cell-0-code
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enumerator: 1
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html_id: nb-cell-0-code
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- type: output
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- type: outputs
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id: T7FMDqDm8dM2bOT1tKeeM
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identifier: nb-cell-0-output
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html_id: nb-cell-0-output
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data:
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- name: stdout
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output_type: stream
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text: abc\n...
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hash: a
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path: files/a.txt
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identifier: nb-cell-0-outputs
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html_id: nb-cell-0-outputs
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children:
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- type: output
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identifier: nb-cell-0-outputs-0
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html_id: nb-cell-0-outputs-0
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jupyter_data:
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name: stdout
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output_type: stream
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text: abc\n...
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hash: a
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path: files/a.txt
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- type: block
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data:
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part: abstract
@@ -373,7 +398,7 @@ cases:
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<body>
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<sec id="sec-2" sec-type="notebook-code">
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<code id="nb-cell-0-code" language="python" executable="yes">print('abc')</code>
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<sec sec-type="notebook-output" id="nb-cell-0-output-0">
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<sec sec-type="notebook-output" id="nb-cell-0-outputs-0">
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<alternatives>
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<media specific-use="stream" mimetype="text" mime-subtype="plain" xlink:href="files/a.txt"/>
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</alternatives>

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