Merge branch 'main' into python3.13

Author: mathbunnyru

.github/workflows/docker-wiki-update.yml

@@ -44,7 +44,7 @@ jobs:
 
       - name: Push Wiki to GitHub 📤
         if: env.PUSH_TO_REGISTRY == 'true'
-        uses: stefanzweifel/git-auto-commit-action@8621497c8c39c72f3e2a999a26b4ca1b5058a842 # v5.0.1
+        uses: stefanzweifel/git-auto-commit-action@e348103e9026cc0eee72ae06630dbe30c8bf7a79 # v5.1.0
         with:
           commit_message: "Automated wiki publish for ${{ github.sha }}"
           repository: wiki/

.gitignore

@@ -167,6 +167,9 @@ cython_debug/
 #  option (not recommended) you can uncomment the following to ignore the entire idea folder.
 #.idea/
 
+# Ruff stuff:
+.ruff_cache/
+
 # PyPI configuration file
 .pypirc
 

.pre-commit-config.yaml

@@ -21,14 +21,14 @@ repos:
 
   # Automatically sort python imports
   - repo: https://github.com/PyCQA/isort
-    rev: 5.13.2
+    rev: 6.0.0
     hooks:
       - id: isort
         args: [--profile, black]
 
   # Autoformat: Python code
   - repo: https://github.com/psf/black
-    rev: 24.10.0
+    rev: 25.1.0
     hooks:
       - id: black
         args: [--target-version=py39]
@@ -123,11 +123,11 @@ repos:
       - id: flake8
 
   # Lint: Markdown
-  - repo: https://github.com/igorshubovych/markdownlint-cli
-    rev: v0.43.0
+  - repo: https://github.com/DavidAnson/markdownlint-cli2
+    rev: v0.17.2
     hooks:
-      - id: markdownlint
-        args: ["--fix"]
+      - id: markdownlint-cli2
+        args: [--fix]
 
   # Strip output from Jupyter notebooks
   - repo: https://github.com/kynan/nbstripout

docs/maintaining/aarch64-runner.md

@@ -6,7 +6,7 @@ Each runner is recommended to have at least _2 cores_ and _30 GB_ of disk space.
 
 Add a new runner:
 
-- To use [Oracle OCI](https://www.oracle.com/cloud-0/), create a compute instance `VM.Standard.A1.Flex`.
+- To use [Oracle OCI](https://www.oracle.com/cloud/), create a compute instance `VM.Standard.A1.Flex`.
 - To use [Google Cloud](https://cloud.google.com), use [this instruction](https://cloud.google.com/compute/docs/instances/create-start-instance).
 
 Configure your runner:

images/base-notebook/jupyter_server_config.py

@@ -9,7 +9,8 @@
 from jupyter_core.paths import jupyter_data_dir
 
 c = get_config()  # noqa: F821
-c.ServerApp.ip = "0.0.0.0"
+# Listen on all interfaces (ipv4 and ipv6)
+c.ServerApp.ip = ""
 c.ServerApp.open_browser = False
 
 # to output both image/svg+xml and application/pdf plot formats in the notebook file

images/base-notebook/start-singleuser.py

@@ -8,9 +8,7 @@
 # Entrypoint is start.sh
 command = ["jupyterhub-singleuser"]
 
-# set default ip to 0.0.0.0
-if "--ip=" not in os.environ.get("NOTEBOOK_ARGS", ""):
-    command.append("--ip=0.0.0.0")
+# JupyterHub singleuser arguments are set using environment variables
 
 # Append any optional NOTEBOOK_ARGS we were passed in.
 # This is supposed to be multiple args passed on to the notebook command,

images/minimal-notebook/setup-scripts/setup_julia.py

@@ -20,13 +20,9 @@
 
 def unify_aarch64(platform: str) -> str:
     """
-    Renames arm64->aarch64 to support local builds on on aarch64 Macs
+    Renames arm64->aarch64 to support local builds on aarch64 Macs
     """
-    return {
-        "aarch64": "aarch64",
-        "arm64": "aarch64",
-        "x86_64": "x86_64",
-    }[platform]
+    return {"arm64": "aarch64"}.get(platform, platform)
 
 
 def get_latest_julia_url() -> tuple[str, str]:
@@ -47,11 +43,12 @@ def get_latest_julia_url() -> tuple[str, str]:
     triplet = unify_aarch64(platform.machine()) + "-linux-gnu"
     file_info = [vf for vf in latest_version_files if vf["triplet"] == triplet][0]
     LOGGER.info(f"Latest version: {file_info['version']} url: {file_info['url']}")
-    if file_info["version"] == "1.11.2":
+    BROKEN_VERSION = "1.11.3"
+    if file_info["version"] == BROKEN_VERSION:
         LOGGER.warning(
-            "Not using Julia 1.11.2, because it hangs in GitHub self-hosted runners"
+            f"Not using Julia {BROKEN_VERSION}, because it hangs in GitHub self-hosted runners"
         )
-        return file_info["url"].replace("1.11.2", "1.11.1"), "1.11.1"
+        return file_info["url"].replace(BROKEN_VERSION, "1.11.1"), "1.11.1"
     return file_info["url"], file_info["version"]
 
 

tagging/get_platform.py

@@ -7,13 +7,9 @@
 
 def unify_aarch64(platform: str) -> str:
     """
-    Renames arm64->aarch64 to support local builds on on aarch64 Macs
+    Renames arm64->aarch64 to support local builds on aarch64 Macs
     """
-    return {
-        "aarch64": "aarch64",
-        "arm64": "aarch64",
-        "x86_64": "x86_64",
-    }[platform]
+    return {"arm64": "aarch64"}.get(platform, platform)
 
 
 def get_platform() -> str:

tests/package_helper.py

@@ -90,7 +90,7 @@ def requested_packages(self) -> dict[str, set[str]]:
 
     def _execute_command(self, command: list[str]) -> str:
         """Execute a command on a running container"""
-        rc = self.running_container.exec_run(command)
+        rc = self.running_container.exec_run(command, stderr=False)
         return rc.output.decode("utf-8")  # type: ignore
 
     @staticmethod