Refreeze

Author: ryantam626

environment-frozen.yml

@@ -3,7 +3,9 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - _libgcc_mutex=0.1=main
+  - _libgcc_mutex=0.1=conda_forge
+  - _openmp_mutex=4.5=1_gnu
+  - _r-mutex=1.0.1=anacondar_1
   - anyio=2.0.2=py39hf3d152e_2
   - argon2-cffi=20.1.0=py39hbd71b63_2
   - async_generator=1.10=py_0
@@ -12,25 +14,49 @@ dependencies:
   - backcall=0.2.0=pyh9f0ad1d_0
   - backports=1.0=py_2
   - backports.functools_lru_cache=1.6.1=py_0
+  - binutils_impl_linux-64=2.35.1=h193b22a_1
+  - binutils_linux-64=2.35=hc3fd857_29
   - bleach=3.2.1=pyh9f0ad1d_0
   - brotlipy=0.7.0=py39h38d8fee_1001
+  - bwidget=1.9.14=ha770c72_0
+  - bzip2=1.0.8=h7f98852_4
+  - c-ares=1.17.1=h36c2ea0_0
   - ca-certificates=2020.12.5=ha878542_0
+  - cairo=1.16.0=h7979940_1007
   - certifi=2020.12.5=py39hf3d152e_0
-  - cffi=1.14.4=py39h261ae71_0
+  - cffi=1.14.4=py39he32792d_1
   - chardet=4.0.0=py39hf3d152e_0
-  - cryptography=3.3.1=py39h3c74f83_0
+  - cryptography=3.3.1=py39h3da14fd_0
+  - curl=7.71.1=he644dc0_8
   - decorator=4.4.2=py_0
   - defusedxml=0.6.0=py_0
   - entrypoints=0.3=pyhd8ed1ab_1003
+  - fontconfig=2.13.1=h736d332_1003
+  - freetype=2.10.4=h7ca028e_0
+  - fribidi=1.0.10=h36c2ea0_0
+  - gawk=5.1.0=h516909a_0
+  - gcc_impl_linux-64=9.3.0=h28f5a38_17
+  - gcc_linux-64=9.3.0=h7247604_29
+  - gettext=0.19.8.1=h0b5b191_1005
+  - gfortran_impl_linux-64=9.3.0=h2bb4189_17
+  - gfortran_linux-64=9.3.0=ha1c937c_29
+  - graphite2=1.3.13=h58526e2_1001
+  - gsl=2.6=he838d99_1
+  - gxx_impl_linux-64=9.3.0=h53cdd4c_17
+  - gxx_linux-64=9.3.0=h0d07fa4_29
+  - harfbuzz=2.7.4=h5cf4720_0
   - icu=68.1=h58526e2_0
   - idna=2.10=pyh9f0ad1d_0
   - importlib-metadata=3.3.0=py39hf3d152e_2
   - importlib_metadata=3.3.0=hd8ed1ab_2
+  - inotify-tools=3.20.2=h516909a_0
   - ipykernel=5.4.2=py39hef51801_0
   - ipython=7.19.0=py39hef51801_0
   - ipython_genutils=0.2.0=py_1
   - jedi=0.18.0=py39hf3d152e_1
   - jinja2=2.11.2=pyh9f0ad1d_0
+  - jpeg=9d=h36c2ea0_0
+  - jq=1.6=h36c2ea0_1000
   - json5=0.9.5=pyh9f0ad1d_0
   - jsonschema=3.2.0=py_2
   - jupyter_client=6.1.7=py_0
@@ -39,79 +65,182 @@ dependencies:
   - jupyterlab=3.0.0=pyhd8ed1ab_0
   - jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
   - jupyterlab_server=2.0.0=pyhd8ed1ab_0
-  - ld_impl_linux-64=2.33.1=h53a641e_7
-  - libedit=3.1.20191231=h14c3975_1
-  - libffi=3.3=he6710b0_2
-  - libgcc-ng=9.1.0=hdf63c60_0
+  - kernel-headers_linux-64=2.6.32=h77966d4_13
+  - krb5=1.17.2=h926e7f8_0
+  - ld_impl_linux-64=2.35.1=hea4e1c9_1
+  - libblas=3.9.0=4_openblas
+  - libcblas=3.9.0=4_openblas
+  - libcurl=7.71.1=hcdd3856_8
+  - libedit=3.1.20191231=he28a2e2_2
+  - libev=4.33=h516909a_1
+  - libffi=3.3=h58526e2_2
+  - libgcc-devel_linux-64=9.3.0=hfd08b2a_17
+  - libgcc-ng=9.3.0=h5dbcf3e_17
+  - libgfortran-ng=9.3.0=he4bcb1c_17
+  - libgfortran5=9.3.0=he4bcb1c_17
+  - libglib=2.66.4=h164308a_1
+  - libgomp=9.3.0=h5dbcf3e_17
+  - libiconv=1.16=h516909a_0
+  - liblapack=3.9.0=4_openblas
+  - libnghttp2=1.41.0=h8cfc5f6_2
+  - libopenblas=0.3.12=pthreads_h4812303_1
+  - libpng=1.6.37=h21135ba_2
   - libsodium=1.0.18=h36c2ea0_1
-  - libstdcxx-ng=9.1.0=hdf63c60_0
-  - libuv=1.40.0=hd18ef5c_0
+  - libssh2=1.9.0=hab1572f_5
+  - libstdcxx-devel_linux-64=9.3.0=h4084dd6_17
+  - libstdcxx-ng=9.3.0=h2ae2ef3_17
+  - libtiff=4.2.0=hdc55705_0
+  - libuuid=2.32.1=h7f98852_1000
+  - libuv=1.40.0=h7f98852_0
+  - libwebp-base=1.1.0=h36c2ea0_3
+  - libxcb=1.13=h14c3975_1002
+  - libxml2=2.9.10=h72842e0_3
+  - lz4-c=1.9.3=h9c3ff4c_0
+  - make=4.3=hd18ef5c_1
   - markupsafe=1.1.1=py39h38d8fee_2
   - mistune=0.8.4=py39hbd71b63_1002
   - nbclassic=0.2.5=pyhd8ed1ab_0
   - nbclient=0.5.1=py_0
   - nbconvert=6.0.7=py39hf3d152e_3
   - nbformat=5.0.8=py_0
-  - ncurses=6.2=he6710b0_1
+  - ncurses=6.2=h58526e2_4
   - nest-asyncio=1.4.3=pyhd8ed1ab_0
   - nodejs=15.3.0=h25f6087_0
   - notebook=6.1.6=py39hf3d152e_0
-  - openssl=1.1.1i=h27cfd23_0
+  - oniguruma=6.9.3=h36c2ea0_0
+  - openssl=1.1.1i=h7f98852_0
   - packaging=20.8=pyhd3deb0d_0
-  - pandoc=2.11.3.1=h7f98852_0
+  - pandoc=2.11.3.2=h7f98852_0
   - pandocfilters=1.4.2=py_1
+  - pango=1.42.4=h69149e4_5
   - parso=0.8.1=pyhd8ed1ab_0
+  - pcre=8.44=he1b5a44_0
+  - pcre2=10.36=h032f7d1_0
   - pexpect=4.8.0=pyh9f0ad1d_2
   - pickleshare=0.7.5=py_1003
-  - pip=20.3.3=py39h06a4308_0
+  - pip=20.3.3=pyhd8ed1ab_0
+  - pixman=0.40.0=h36c2ea0_0
   - prometheus_client=0.9.0=pyhd3deb0d_0
   - prompt-toolkit=3.0.8=pyha770c72_0
-  - ptyprocess=0.6.0=py_1001
+  - pthread-stubs=0.4=h36c2ea0_1001
+  - ptyprocess=0.7.0=pyhd3deb0d_0
   - pycparser=2.20=pyh9f0ad1d_2
   - pygments=2.7.3=pyhd8ed1ab_0
   - pyopenssl=20.0.1=pyhd8ed1ab_0
   - pyparsing=2.4.7=pyh9f0ad1d_0
   - pyrsistent=0.17.3=py39hbd71b63_1
   - pysocks=1.7.1=py39h079e4ff_2
-  - python=3.9.1=hdb3f193_2
+  - python=3.9.1=hffdb5ce_2_cpython
   - python-dateutil=2.8.1=py_0
   - python_abi=3.9=1_cp39
   - pytz=2020.5=pyhd8ed1ab_0
   - pyzmq=20.0.0=py39h25affbc_1
-  - readline=8.0=h7b6447c_0
+  - r-assertthat=0.2.1=r40h6115d3f_2
+  - r-backports=1.2.1=r40hcfec24a_0
+  - r-base=4.0.3=hd23ff56_4
+  - r-cli=2.2.0=r40hc72bb7e_0
+  - r-crayon=1.3.4=r40h6115d3f_1003
+  - r-digest=0.6.27=r40h1b71b39_0
+  - r-ellipsis=0.3.1=r40hcdcec82_0
+  - r-fansi=0.4.1=r40hcdcec82_1
+  - r-formatr=1.7=r40h6115d3f_2
+  - r-glue=1.4.2=r40hcdcec82_0
+  - r-lifecycle=0.2.0=r40h6115d3f_1
+  - r-magrittr=2.0.1=r40h9e2df91_1
+  - r-pillar=1.4.7=r40hc72bb7e_0
+  - r-pkgconfig=2.0.3=r40h6115d3f_1
+  - r-purrr=0.3.4=r40hcdcec82_1
+  - r-r.cache=0.14.0=r40h6115d3f_1
+  - r-r.methodss3=1.8.1=r40h6115d3f_0
+  - r-r.oo=1.24.0=r40h6115d3f_0
+  - r-r.utils=2.10.1=r40h6115d3f_0
+  - r-rematch2=2.1.2=r40h6115d3f_1
+  - r-rlang=0.4.10=r40hcfec24a_0
+  - r-rprojroot=2.0.2=r40hc72bb7e_0
+  - r-styler=1.3.2=r40h6115d3f_1
+  - r-tibble=3.0.4=r40h0eb13af_0
+  - r-utf8=1.1.4=r40hcdcec82_1003
+  - r-vctrs=0.3.6=r40hcfec24a_0
+  - r-withr=2.3.0=r40h6115d3f_0
+  - r-xfun=0.19=r40h9e2df91_0
+  - r-zeallot=0.1.0=r40h6115d3f_1002
+  - readline=8.0=he28a2e2_2
   - requests=2.25.1=pyhd3deb0d_0
+  - rpy2=3.3.6=py39r40hce5d2b2_0
+  - sed=4.8=he412f7d_0
   - send2trash=1.5.0=py_0
-  - setuptools=51.0.0=py39h06a4308_2
+  - setuptools=49.6.0=py39h079e4ff_2
+  - simplegeneric=0.8.1=py_1
   - six=1.15.0=pyh9f0ad1d_0
   - sniffio=1.2.0=py39hf3d152e_0
-  - sqlite=3.33.0=h62c20be_0
+  - sqlite=3.34.0=h74cdb3f_0
+  - sysroot_linux-64=2.12=h77966d4_13
   - terminado=0.9.1=py39hf3d152e_1
   - testpath=0.4.4=py_0
-  - tk=8.6.10=hbc83047_0
+  - tk=8.6.10=h21135ba_1
+  - tktable=2.10=hb7b940f_3
   - tornado=6.1=py39hbd71b63_0
   - traitlets=5.0.5=py_0
-  - tzdata=2020d=h14c3975_0
+  - tzdata=2020f=he74cb21_0
+  - tzlocal=2.1=pyh9f0ad1d_0
   - urllib3=1.26.2=pyhd8ed1ab_0
   - wcwidth=0.2.5=pyh9f0ad1d_2
   - webencodings=0.5.1=py_1
-  - wheel=0.36.2=pyhd3eb1b0_0
-  - xz=5.2.5=h7b6447c_0
+  - wheel=0.36.2=pyhd3deb0d_0
+  - xorg-kbproto=1.0.7=h14c3975_1002
+  - xorg-libice=1.0.10=h516909a_0
+  - xorg-libsm=1.2.3=h84519dc_1000
+  - xorg-libx11=1.6.12=h516909a_0
+  - xorg-libxau=1.0.9=h14c3975_0
+  - xorg-libxdmcp=1.1.3=h516909a_0
+  - xorg-libxext=1.3.4=h516909a_0
+  - xorg-libxrender=0.9.10=h516909a_1002
+  - xorg-libxt=1.2.0=h516909a_0
+  - xorg-renderproto=0.11.1=h14c3975_1002
+  - xorg-xextproto=7.3.0=h14c3975_1002
+  - xorg-xproto=7.0.31=h7f98852_1007
+  - xz=5.2.5=h516909a_1
   - zeromq=4.3.3=h58526e2_3
   - zipp=3.4.0=py_0
-  - zlib=1.2.11=h7b6447c_3
+  - zlib=1.2.11=h516909a_1010
+  - zstd=1.4.8=ha95c52a_1
   - pip:
+    - alabaster==0.7.12
     - appdirs==1.4.4
+    - autopep8==1.5.4
     - black==20.8b1
     - click==7.1.2
+    - colorama==0.4.4
+    - docutils==0.16
+    - imagesize==1.2.0
     - iniconfig==1.1.1
-    - isort==5.6.4
+    - isort==5.7.0
+    - jeepney==0.6.0
+    - keyring==21.8.0
     - mypy-extensions==0.4.3
     - pathspec==0.8.1
+    - pkginfo==1.6.1
     - pluggy==0.13.1
     - py==1.10.0
+    - pycodestyle==2.6.0
     - pytest==6.2.1
+    - readme-renderer==28.0
     - regex==2020.11.13
+    - requests-toolbelt==0.9.1
+    - rfc3986==1.4.0
+    - secretstorage==3.3.0
+    - snowballstemmer==2.0.0
+    - sphinx==3.4.1
+    - sphinx-rtd-theme==0.5.0
+    - sphinxcontrib-applehelp==1.0.2
+    - sphinxcontrib-devhelp==1.0.2
+    - sphinxcontrib-htmlhelp==1.0.3
+    - sphinxcontrib-jsmath==1.0.1
+    - sphinxcontrib-qthelp==1.0.3
+    - sphinxcontrib-serializinghtml==1.1.4
     - toml==0.10.2
-    - typed-ast==1.4.1
+    - tqdm==4.55.0
+    - twine==3.3.0
+    - typed-ast==1.4.2
     - typing-extensions==3.7.4.3
-
+    - yapf==0.30.0

environment.yml

@@ -3,7 +3,7 @@ channels:
   - conda-forge
   - r
 dependencies:
-  - jupyterlab==2.2.0
+  - jupyterlab==3.0.0
   - rpy2
   - r-formatr
   - r-styler