Fix sync file upload (#906)

* Fix sync file upload

Updated the workflow to copy changed files to an artifact directory instead of listing them.

* Preserve `package.json` and `tbump.toml` updates

Add steps to upload and download updated package files in CI workflow.

* Add missing `env_installer/jlab_server.yaml`

Author: krassowski

.github/workflows/sync_lab_release.yml

@@ -60,6 +60,17 @@ jobs:
             echo "update_available=false" >> $GITHUB_OUTPUT
           fi
 
+      - name: Upload updated version spec files
+        uses: actions/upload-artifact@v4
+        if: steps.check-update.outputs.update_available == 'true'
+        with:
+          name: updated-version-info
+          path: |
+            tbump.toml
+            package.json
+            env_installer/jlab_server.yaml
+          if-no-files-found: error
+
   update-files:
     needs: check-latest-version
     if: needs.check-latest-version.outputs.update_available == 'true'
@@ -73,6 +84,12 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
+      - name: Download updated version info
+        uses: actions/download-artifact@v4
+        with:
+          name: updated-version-info
+          path: .
+
       - name: Install Node
         uses: actions/setup-node@v4
         with:
@@ -105,20 +122,22 @@ jobs:
           yarn clean_env_installer && conda-lock install --no-validate-platform --prefix ./env_installer/jlab_server ./env_installer/conda-osx-arm64.lock
           yarn update_binary_sign_list --platform osx-arm64
 
-      - name: Get changed files
-        id: changed-files
+      - name: Copy changed files to artifact directory
         run: |
-          git diff --name-only > changed_files.txt
-          echo "files<<EOF" >> $GITHUB_OUTPUT
-          cat changed_files.txt >> $GITHUB_OUTPUT
-          echo "EOF" >> $GITHUB_OUTPUT
+          mkdir -p changed-files
+          changed_files=$(git diff --name-only)
+          echo "$changed_files" | while read file; do
+            if [ -f "$file" ]; then
+              mkdir -p "changed-files/$(dirname "$file")"
+              cp "$file" "changed-files/$file"
+            fi
+          done
 
       - name: Upload updated repo as artifact
         uses: actions/upload-artifact@v4
         with:
           name: updated-repo
-          path: |
-            ${{ steps.changed-files.outputs.files }}
+          path: changed-files/
           if-no-files-found: error
 
   push-and-pr:
@@ -140,7 +159,7 @@ jobs:
         with:
           token: ${{ steps.app-token.outputs.token }}
 
-      - name: Download updated repo
+      - name: Download updated lock files and sign lists
         uses: actions/download-artifact@v4
         with:
           name: updated-repo