ci : ask `uv` to install `Cython` #149

	name: CI

	on:
	schedule:
	- cron: '45 01 30 * *'

	push:

	pull_request:
	branches: [main]

	fork:

	workflow_dispatch:


	jobs:
	badges:
	name: Add Google Colab Badges
	runs-on: ubuntu-latest
	permissions:
	contents: write
	timeout-minutes: 5
	steps:
	- name: Checkout
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: '3.11'

	- name: Set up uv
	uses: astral-sh/setup-uv@v5

	- name: Create virtual environment
	run: uv venv

	- name: Install dependencies
	run: uv pip install beautifulsoup4 jupyter lxml

	- name: Add/Update badges
	run: uv run python ./utils/add_colab_main_buttons.py

	- name: Commit & push
	uses: stefanzweifel/git-auto-commit-action@v5
	with:
	commit_message: "Clean ipynb ${{ github.sha }}"

	test_ipynb:
	needs: badges
	name: Test ipynb on Python ${{ matrix.python-version }}
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.10", "3.11"]
	fail-fast: false
	timeout-minutes: 30
	steps:
	- name: Checkout
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Set up uv
	uses: astral-sh/setup-uv@v5

	- name: Create virtual environment
	run: uv venv

	- name: Install dependencies
	run: uv pip install pytest pytest-json-report pytest-xdist Cython jupyter nbconvert numpy matplotlib pandas scipy sympy

	- name: Run tests
	env:
	TEST_IPYNB_IGNORE_FOLDER: tutorial
	run: uv run pytest --numprocesses=auto -k 'not (links or update_nmisp_py)' tests/

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