ci : update yaml recipes

remove *.sh files
separate link checking and ipynb testing

Author: beachdweller

.github/workflows/build_env.sh

@@ -0,0 +1,29 @@
+name: Check Links
+
+on: 
+  schedule:
+    - cron: '45 01 30 * *'
+  pull_request:
+  workflow_dispatch:
+
+jobs:
+  test_links_utils:
+    name: Check links in ipynb
+    runs-on: ubuntu-latest
+    timeout-minutes: 5
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v4
+
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: '3.x'
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install pytest pytest-xdist requests jupyter lxml numpy matplotlib scipy sympy
+
+    - name: Check links
+      run: python -m pytest -n auto ./tests/test_check_links_in_ipynb.py ./utils/tests/

.github/workflows/check_links.yml

@@ -1,77 +1,63 @@
 name: CI
 
 on: 
-  schedule:
-    - cron: '45 01 30 * *'
   push:
-  fork:
+  pull_request:
+  workflow_dispatch:
 
 jobs:
-  test_links_utils:
-    name: Check links in ipynb
-    runs-on: ubuntu-latest
-    timeout-minutes: 5
-    steps:
-    - name: checkout
-      id: checkout
-      uses: actions/checkout@v4
-
-    - name: setup environment
-      id: setup
-      run: python -m pip install pytest pytest-xdist requests jupyter lxml numpy matplotlib scipy sympy
-
-    - name: check links
-      id: links
-      run: python -m pytest -n auto ./tests/test_check_links_in_ipynb.py ./utils/tests/
-
   badges:
     name: Add Google Colab Badges
-    needs: test_links_utils
     runs-on: ubuntu-latest
     permissions:
       contents: write
     timeout-minutes: 5
     steps:
-    - name: checkout
-      id: checkout
+    - name: Checkout
       uses: actions/checkout@v4
 
-    - name: Update pip
-      run: python -m pip install --upgrade pip
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: '3.x'
 
-    - name: setup environment
-      id: setup
-      run: python -m pip install bs4 jupyter lxml
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install bs4 jupyter lxml
 
     - name: Add/Update badges
-      id: badges
       run: python ./utils/add_colab_main_buttons.py
 
     - name: Commit & push
-      id: commit
       uses: stefanzweifel/git-auto-commit-action@v5
       with:
-        commit_message : "Clean ipynb ${{ github.sha }}"
+        commit_message: "Add Google Colab badges"
 
   test_ipynb:
     needs: badges
-    name: ${{ matrix.anaconda }} on ${{ matrix.os }}
-    runs-on: ${{ matrix.os }}
+    name: Test ipynb with Anaconda ${{ matrix.anaconda }}
+    runs-on: ubuntu-latest
     strategy:
       matrix:
-        os: [ubuntu-latest]
-        anaconda: ["2021.11", nightly]
+        anaconda: ["2021.11", "nightly"]
       fail-fast: false
     timeout-minutes: 30
     steps:
-    - uses: actions/checkout@v4
+    - name: Checkout
+      uses: actions/checkout@v4
 
-    - name: build environment
-      env:
-        CONDA_PYTHON: ${{ matrix.anaconda }}
-      run: bash ./.github/workflows/build_env.sh
+    - name: Set up Miniconda
+      uses: conda-incubator/setup-miniconda@v3
+      with:
+        auto-update-conda: true
+        miniconda-version: "latest"
+        environment-file: ./tests/environment.${{ matrix.anaconda }}.yml
+        activate-environment: test-environment
 
-    - name: pytest
+    - name: Run tests
+      shell: bash -l {0}
       env:
         TEST_IPYNB_IGNORE_FOLDER: tutorial
-      run: bash ./.github/workflows/run_test.sh
+      run: |
+        pytest --numprocesses=auto -k 'not (links or update_nmisp_py)' tests/