ggpubr/_pkgdown.yml at master · kassambara/ggpubr · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
url: https://rpkgs.datanovia.com/ggpubr/
llm-docs: false

template:
  bootstrap: 5
  params:
    bootswatch: lumen
    ganalytics: G-62JB5GM9C4
    docsearch:
      index_name: ggpubr

reference:
  - title: Plot One Variable - X, Continuous
    desc:  Visualize distributions.
    contents:
      - ggdensity
      - stat_overlay_normal_density
      - gghistogram
      - ggecdf
      - ggqqplot
  - title: Plot Two Variables - X and Y, Discrete X and Continuous Y
    desc: Visualize data distributions by groups.
    contents:
      - ggboxplot
      - ggviolin
      - ggdotplot
      - ggstripchart
      - ggbarplot
      - ggline
      - ggerrorplot
      - ggpie
      - ggdonutchart
      - ggdotchart
      - ggsummarystats
  - title: Plot Two Continuous Variables
    desc: Scatter plots
    contents:
      - ggscatter
      - stat_cor
      - stat_regline_equation
      - stat_stars
      - ggscatterhist
  - title: Plot Paired Data
    desc: Paired data
    contents:
      - ggpaired
  - title: Comparing Means and Adding p-values
    contents:
      - compare_means
      - stat_compare_means
      - stat_pvalue_manual
      - stat_anova_test
      - stat_kruskal_test
      - stat_welch_anova_test
      - stat_friedman_test
      - geom_pwc
      - geom_bracket
      - ggadjust_pvalue
  - title: P-Value Formatting
    contents:
      - format_p_value
      - create_p_label
      - get_p_format_style
      - list_p_format_styles
  - title: Plot Tables and Paragraphs
    contents:
      - ggtexttable
      - ggparagraph
      - text_grob
  - title: Contingency table
    contents:
      - ggballoonplot
  - title: Genomics
    desc: Plotting data obtained from genomic data analyses.
    contents:
      - ggmaplot
  - title: Themes
    contents:
      - theme_pubr
      - theme_transparent
  - title: Graphical Parameters
    desc: Change graphical parameters such as, titles, legend, colors, axis limits, scale transformation (log, sqrt), axis ticks and plot orientation (vertical, horizontal).
    contents:
      - ggpar
      - show_line_types
      - show_point_shapes
      - font
      - rotate
      - rotate_axis_text
      - set_palette
      - gradient_color
      - border
      - bgcolor
      - rremove
      - grids
      - axis_scale
      - get_breaks
      - get_legend
  - title: Arrange and Export Multiple ggplots
    contents:
      - ggarrange
      - ggexport
      - annotate_figure
      - background_image
  - title: Make Programming Easy with GGPlot2
    contents:
      - geom_exec
      - create_aes
  - title: Coordinates
    contents:
      - as_npc
      - npc_to_data_coord
      - get_coord
  - title: Helpers
    contents:
      - facet
      - add_summary
      - ggadd
      - get_palette
      - as_ggplot
      - ggtext
      - ggpubr_options
      - ggpubr_args
      - clean_lock_files
  - title: Data
    contents:
      - diff_express
      - gene_citation
      - gene_expression
  - title: Others
    contents:
      - desc_statby
      - stat_chull
      - stat_conf_ellipse
      - stat_mean
      - stat_central_tendency
      - reexports