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test.emb
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59 lines (50 loc) · 2.7 KB
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########################################
# Program: needle
# Rundate: Wed 5 Mar 2025 16:05:28
# Commandline: needle
# -asequence asis:RMLFQTSYTLENNGSVICIPNNGQCFCLAWLKSNGTNAEKLAANILQWITFALSALCLMFYGYQTWKSTCGWEEIYVATIEMIKFIIEYFHEFDEPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGLANDYNKRTMGLLVSDIGTIVWGTTAALSKGYVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPKGRCRQVVTGMAWLFFVSWGMFPILFILGPEGFGVLSVYGSTVGHTIIDLMSKNCWGLLGHYLRVLIHEHILIHGDIRKTTKLNIGGTEIEVETLVEDE
# -bsequence asis:EYHAPAGYQVNPPYHPVHGYEEQCSSIYIYYGALWEQETARGFQWFAVFLSALFLAFYGWHAYKASVGWEEVYVCSVELIKVILEIYFEFTEPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNITGLSEAYNKRTMALLVSDLGTICMGVTAALATGWVKWLFYCIGLVYGTQTFYNAGIIYVESYYIMPAGGCKKLVLAMTAVYYSSWLMFPGLFIFGPEGMHTLSVAGSTIGHTIADLLSKNIWGLLGHFLRIKIHEHIIMYGDIRRPVSSQFLGRKVDVLAFVTEE
# -gapopen 5.0
# -gapextend 5.0
# -brief
# -outfile /mnt/c/Users/jamel/PycharmProjects/Jamel/test.emb
# Align_format: srspair
# Report_file: /mnt/c/Users/jamel/PycharmProjects/Jamel/test.emb
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: asis
# 2: asis
# Matrix: EBLOSUM62
# Gap_penalty: 5.0
# Extend_penalty: 5.0
#
# Length: 296
# Identity: 155/296 (52.4%)
# Similarity: 204/296 (68.9%)
# Gaps: 7/296 ( 2.4%)
# Score: 811.0
#
#
#=======================================
asis 1 RMLFQTSYTLENNGSVICIPN-NGQCFCLAWLKSNGTNAEKLAANILQWI 49
.:......:.|.....:.. ..||..: :: ..|...|:..|...||.
asis 1 --EYHAPAGYQVNPPYHPVHGYEEQCSSI-YI-YYGALWEQETARGFQWF 46
asis 50 TFALSALCLMFYGYQTWKSTCGWEEIYVATIEMIKFIIE-YFHEFDEPAV 98
...||||.|.|||:..:|::.||||:||.::|:||.|:| || ||.||||
asis 47 AVFLSALFLAFYGWHAYKASVGWEEVYVCSVELIKVILEIYF-EFTEPAV 95
asis 99 IYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGLANDYNKRTMGLLVSDI 148
||||||||||||||||||||||||||||||:|||:..||||||.|||||:
asis 96 IYSSNGNKTVWLRYAEWLLTCPVILIHLSNITGLSEAYNKRTMALLVSDL 145
asis 149 GTIVWGTTAALSKGYVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPKGR 198
|||..|.||||:.|:|:.:|:.:||.||..||:||..:|:|:|:.:|.|.
asis 146 GTICMGVTAALATGWVKWLFYCIGLVYGTQTFYNAGIIYVESYYIMPAGG 195
asis 199 CRQVVTGMAWLFFVSWGMFPILFILGPEGFGVLSVYGSTVGHTIIDLMSK 248
|:::|..|..:::.||.|||.|||.||||...|||.|||:||||.||:||
asis 196 CKKLVLAMTAVYYSSWLMFPGLFIFGPEGMHTLSVAGSTIGHTIADLLSK 245
asis 249 NCWGLLGHYLRVLIHEHILIHGDIRKTTKLNIGGTEIEVETLVEDE 294
|.||||||:||:.|||||:::||||:.......|.:::|...|.:|
asis 246 NIWGLLGHFLRIKIHEHIIMYGDIRRPVSSQFLGRKVDVLAFVTEE 291
#---------------------------------------
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