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README: Update gimme_taxa.py documentation to mention -j when used with ngd --taxids
This fixes issue #215 Signed-off-by: Kai Blin <[email protected]>
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@@ -307,6 +307,14 @@ python gimme_taxa.py -h
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python gimme_taxa.py --help
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```
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To use the `gimme_taxa.py` script with `ncbi-genome-download`'s `--taxids` option,
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you need to call `gimme_taxa.py` with the `-j` option, like this:
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```bash
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gimme_taxa.py -j -o my_taxids.txt Escherichia
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ncbi-genome-download --taxids my_taxids.txt bacteria
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```
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## Citing `ncbi-genome-download`
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You can cite `ncbi-genome-download` via the Zenodo deposit under

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