cibw changes

Author: kcleal

.github/workflows/manylinux_2_28.yaml

@@ -18,13 +18,12 @@ jobs:
           CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28
           CIBW_BUILD: "cp310-manylinux* cp311-manylinux* cp312-manylinux* cp313-manylinux*"
 
-          CIBW_ENVIRONMENT: |
+          CIBW_ENVIRONMENT_LINUX: |
             BUILD_GLFW=0
             BUILD_FREETYPE=1
             CPPFLAGS="-I/usr/local/include"
             LDFLAGS="-L/usr/local/lib"
 
-          CIBW_ENVIRONMENT_PASS_LINUX: BUILD_GLFW BUILD_FREETYPE CXXFLAGS CPPFLAGS LDFLAGS
           CIBW_BEFORE_ALL_LINUX: bash ci/manylinux-build-deps
           CIBW_BEFORE_BUILD_LINUX: |
             python -m pip install pysam>=0.23.0 numpy>=1.19.3 cython>=3.0.0

ci/manylinux-build-deps

@@ -1,7 +1,14 @@
 #!/bin/bash
 
 echo "STARTING MANYLINUX-DEPS"
+echo "=== Environment Variables ==="
+echo "BUILD_FREETYPE: $BUILD_FREETYPE"
+echo "BUILD_GLFW: $BUILD_GLFW"
+echo "CPPFLAGS: $CPPFLAGS"
+echo "LDFLAGS: $LDFLAGS"
+echo "================================"
 env
+echo "================================"
 
 yum install -y epel-release
 
@@ -66,8 +73,7 @@ cd htslib
 make -j3 && make install
 cd ../
 
-# freetype - build both static and shared
-if [ -n "$BUILD_FREETYPE" ]; then
+if [[ "$BUILD_FREETYPE" == "1" ]]; then
 
   echo "Removing system FreeType packages..."
   yum remove -y freetype freetype-devel || true