Bactabolize v.1.0.4 feature wishlist #20
Description
Table of to-do's
| To-do | Reason |
|---|---|
| Print reaction flux as optional output during draft_model, fba and sgk | Useful for downstream analysis |
| Change blast+ toMMseqs2 to increase speed and accuracy of ortholog finding | https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-07132-6 |
| Substitute prodigal to pyrodigal https://github.com/althonos/pyrodigal | This is faster than prodigal at finding ORFs |
| Print reaction table | For end user ease |
| x | x |