Eureka/setup.cfg at main · kevin218/Eureka · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
[metadata]
name = eureka-bang
author = Eureka! pipeline developers
author_email = kbstevenson@gmail.com
description = A data reduction and analysis pipeline intended for time-series observations with JWST.
long_description = file: README.md
long_description_content_type = text/markdown
license = MIT
url = https://github.com/kevin218/Eureka
project_urls =
    Bug Tracker = https://github.com/kevin218/Eureka/issues
    Source Code = https://github.com/kevin218/Eureka
keywords =
    JWST
    HST
    timeseries
    astronomy
    exoplanets
    transit
    eclipse
    light curve
    phase curve
    spectroscopy
    photometry
    data reduction
    data analysis
    pipeline
platforms = any
classifiers =
    Development Status :: 5 - Production/Stable
    Intended Audience :: Science/Research
    Topic :: Scientific/Engineering :: Astronomy
    Programming Language :: Python :: 3
    License :: OSI Approved :: MIT License
    Operating System :: OS Independent


[options]
package_dir =
    =src
packages = find:
zip_safe = True
python_requires= >=3.11,<3.14
include_package_data = True
install_requires =
    astraeus-io
    astropy
    astroquery
    batman-package
    bokeh
    catwoman>=1.0.16 # Lower limit needed to avoid installation bug
    ccdproc
    celerite2 # Needed for GP
    corner
    crds
    dynesty>1.0 # Lower limit needed for specific arguments
    emcee>3.0.0 # Lower limit needed for specific arguments
    exotic-ld@git+https://github.com/taylorbell57/ExoTiC-LD.git@0bb2ff8 # Pin needed for pkg_resources deprecation
    fleck
    george # Needed for GP
    h5py>=3.7.0 # Lower limit needed to avoid issues with JWST I/O routines
    lmfit
    matplotlib>=3.6 # Lower limit needed for set_layout_engine()
    mc3 # Needed for uncertainties in the RMS time-averaging plots in S5
    numpy>=1.20.0,<2.0 # numpy 2.0 introduces breaking changes for some packages
    pandas
    pastasoss>=1.2.3 # Lower limit needed for pkg_resources deprecation
    photutils
    # planet-harmonica # Currently only supports for python 3.8 -- 3.10
    planet-harmonica@git+https://github.com/DavoGrant/harmonica@main
    requests
    scipy>=1.12.0 # Lower limit needed for stcal.ramp_fitting.likely_fit
    setuptools_scm>=6.2 # Needed to support pyproject.toml config
    shapely
    stdatamodels
    svo_filters>=0.5.3 # Lower limit needed for pkg_resources deprecation
    tqdm


[options.package_data]
eureka.lib = *.mplstyle


[options.packages.find]
where = src


[options.extras_require]
jwst =
    jwst==1.20.2 # Pinned due to CRDS/stcal compatibility requirements
    stcal>=1.15.2 # Lower limit needed for updated stcal.ramp_fitting.ramp_fit.ramp_fit arguments
hst =
    image_registration@git+https://github.com/keflavich/image_registration@70e3880 # Need GitHub version to avoid np.float issue
docs =
    myst-parser>=0.18.0 # Lower bound for stable MyST support
    nbsphinx>=0.8.9 # Compatible with modern Sphinx and Jupyter
    numpydoc>=1.5 # Avoids issues with recent Sphinx versions
    sphinx>=6.0 # Modern baseline version
    sphinx-automodapi>=0.13.0 # Known to work with sphinx>=6
    sphinx-rtd-theme>=1.3.0 # Style updates and Sphinx compatibility
test =
    flake8
    pytest<8.0 # Upper limit due to asdf+pytest incompatibility
    pytest-cov
    pytest-doctestplus
jupyter =
    ipykernel>=6.0.0 # Needed for modern Jupyter compatibility
    ipympl>=0.9.3 # Needed for interactive backend stability
    ipython>=7.0.0 # Avoid legacy issues with async REPL
    jupyter>=1.0.0 # Base metapackage
dev =
    build
    twine


[flake8]
# Error codes explained here: https://pycodestyle.pycqa.org/en/latest/intro.html#error-codes
select = E1,E2,E3,E4,E5,E7,W6,F
ignore = W504,W503,E704,E226,E722
exclude =
    # Ignore built files
    ./build/**/*
    **/site-packages/**/*
    # Ignore docs
    ./docs/**/*
    # Ignore VS Code files
    .vscode/*
    # Ignore files in my ecfs folder
    ./ecfs/*
    # Ignore run_eureka.py files in demos folder
    **/run_eureka*.py
per-file-ignores =
    # Need to have unused imports in the init files
    **/__init__.py:F401
    # Need unused imports in the init files, need to mute some warnings
    ./src/eureka/__init__.py:F401,E402
    # Want to suppress the "figure with num: #### already exists" UserWarnings
    ./src/eureka/**/plots*.py:E402
    # Using exec commands, so variable is actually used
    **/manageevent.py:F841
    # Need to allow prepending to PATH
    ./demos/**/run_*.py:E402
    # Need to protect against crashes if jwst not installed
    **/test_*.py:E402
    # Need to protect against crashes if hst packages not installed
    **/test_WFC3.py:F401,E402
    # Keep the unused numpy so users can pass in numpy values (e.g. np.inf)
    **/readECF.py:F401
    # Keep the aligned values to explain what they are
    **/hst_scan.py:E241
    # Temporarily ignore unused s1 error until we have an S1 test
    **/test_MIRI.py:F401,E402
    # Ignore over length bibtex lines
    ./src/eureka/lib/citations.py:E501