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lines changed Original file line number Diff line number Diff line change 66![ PyPI] ( https://img.shields.io/pypi/v/sclitr )
77![ License: MIT] ( https://img.shields.io/badge/License-MIT-yellow.svg )
88
9- scLiTr is a Python package for analysis of lineage tracing coupled with single-cell RNA-Seq.
9+ clone2vec is a Python package for analysis of lineage tracing coupled with single-cell RNA-Seq.
1010
1111The main key of the package are clonal embeddings — vector representations of the whole clones
12- in low dimensional space (clone2vec) . These representations is a dropout-robust and cluster-free
12+ in low dimensional space. These representations is a dropout-robust and cluster-free
1313way of representation of heterogeneity within clonal behaviour for cell type tree-free hypothesis
1414generation regarding cells' multipotency.
1515
@@ -25,18 +25,18 @@ See [Technical Note](https://github.com/kharchenkolab/scLiTr/blob/main/docs/Tech
2525
2626## Installation
2727
28- scLiTr might be installed via ` pip ` (takes 1-2 minutes on Google Colab):
28+ clone2vec might be installed via ` pip ` (takes 1-2 minutes on Google Colab):
2929``` bash
3030pip install sclitr
3131```
3232or the latest development version can be installed from GitHub using:
3333``` bash
34- pip install git+https://github.com/kharchenkolab/scLiTr
34+ pip install git+https://github.com/kharchenkolab/clone2vec
3535```
3636
3737## System requirements
3838
39- ` scLiTr ` requires Python 3.8 or later with packages listed in [ setup.cfg] ( setup.cfg ) file. The package was successfully tested
39+ ` clone2vec ` requires Python 3.8 or later with packages listed in [ setup.cfg] ( setup.cfg ) file. The package was successfully tested
4040on the following systems:
4141
4242* macOS Sonoma 14.5 (Apple M1 Chip @ 3.20GHz × 8, 16GB RAM) — * MacBook Air M1* ,
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