the code for use of the new datas?

[forestlin7]

If i want to use a new data, how can i change from .txt to .mtx in geo?

[Jerry001]

Hi forestlin7,

mtx files are not necessary. Here we use sparse matrix to only to save space.

mtx = data_dir + 'uc_epi.mtx'
x = read_mtx(mtx)
x = x.transpose().todense()

Also, for computational efficiency, we currently use highly variable genes (~2000, still a random number) for analysis.

Jiarui