aquaverse/index.html at master · klavinslab/aquaverse · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
<!DOCTYPE html>
<html ng-app='aquaverse' ng-controller="aquaverseCtrl" id="aquaverseCtrl" ng-cloak>
  <head>

    <title>Aquarium</title>

    <meta name="description" content="The Aquarium Laboratory Operating System">
    <meta name="author" content="Eric Klavins">
    <meta name="keywords"
          content="Aquarium, Molecular Biology, Lab Automation, Protocols, Workflows, Reproducibility, LIMS, Synthetic Biology">

    <meta name="viewport" content="width=device-width, initial-scale=1.0">
    <meta charset="utf-8">

    <script src="node_modules/angular/angular.min.js"></script>
    <script src="node_modules/angular-animate/angular-animate.min.js"></script>
    <script src="node_modules/angular-aria/angular-aria.min.js"></script>
    <script src="node_modules/angular-messages/angular-messages.min.js"></script>
    <script src="node_modules/jquery/dist/jquery.min.js"></script>
    <script src="node_modules/angular-material/angular-material.min.js"></script>

    <script src="node_modules/showdown/dist/showdown.min.js"></script>
    <script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.13.1/highlight.min.js"></script>


    <script src="js/highlight.js"></script>
    <script src="js/definitions.js"></script>
    <script src="js/aquaverse.js"></script>
    <script src="js/workflows.js"></script>

    <link rel="icon" href="aqicon.ico" type="image/x-icon" />
    <link rel="shortcut icon" href="aqicon.ico" type="image/x-icon" />
    <link rel="stylesheet" href="node_modules/angular-material/angular-material.min.css">
    <link rel="stylesheet" href="node_modules/github-markdown-css/github-markdown.css">
    <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.13.1/styles/vs.min.css">
    <link rel="stylesheet" href="css/aquaverse.css">

  	<!-- Global site tag (gtag.js) - Google Analytics -->
  	<script async src="https://www.googletagmanager.com/gtag/js?id=UA-130623974-1"></script>
  	<script>
  	  window.dataLayer = window.dataLayer || [];
  	  function gtag(){dataLayer.push(arguments);}
  	  gtag('js', new Date());
  	  gtag('config', 'UA-130623974-1');
  	</script>

    <meta name="twitter:card" content="summary" />
    <meta name="twitter:site" content="@klavins" />
    <meta name="twitter:creator" content="@klavins" />
    <meta name="twitter:title" content="Aquarium" />
    <meta name="twitter:description" content="Build reproducible experimental workflows, manage samples, store data, and share know-how. ">
    <meta name="twitter:image" content="https://www.aquarium.bio/images/logo.png" />

  </head>

  <body style="position: relative">
    <header class="logo-container">
      <h1 class="logo md-display-4"><span class="aq">Aq</span></h1>
      <h2 class="tagline md-title" ng-bind-html="tagline"></h2>
    </header>

    <md-toolbar flex class="header">

      <div class="md-toolbar-tools main-toolbar">

        <svg xmlns="https://www.w3.org/2000/svg"
             viewBox="0 0 24 24" width="30" height="30"
             class="md-toolbar-item menu-icon"
             ng-click="open_sidenav()">
          <path d="M3 18h18v-2H3v2z"></path>
          <path d="M3 13h18v-2H3v2z"></path>
          <path d="M3 6v2h18V6H3z"></path>
        </svg>

        <h2 flex class="md-toolbar-item md-headline">
          <span class="aquarium">
            <a href="#" ng-click="easy_select('Overview', 'About')">
              AQUARIUM
            </a>
          </span>
          <span class="location">/ {{state.section.category}} / {{state.active_content.name}}</span>
        </h2>

       <div id="toolbar-prev-next">
         <md-button class="md-icon-button toobar-button" ng-disabled="!has_prev()" ng-click="prev()">&#9664;</md-button>
         <md-button class="md-icon-button toobar-button" ng-disabled="!has_next()" ng-click="next()">&#9654;</md-button>
       </div>

      </div>

    </md-toolbar>

    <div layout="row" class="main-row">

      <md-sidenav
        class="md-sidenav-left sidenav"
        md-component-id="sidenav"
        md-is-locked-open="$mdMedia('gt-sm')"
        id="sidenav">
        <ul class="nav-list">
          <li ng-repeat="section in navigation">
            <div class="category-container"
                 ng-click="section.open = !section.open">
              <div class="md-body category-title">
                {{section.category}}
              </div>
            </div>
            <ul ng-show="section.open" class="nav-sublist">
              <li ng-repeat="content in section.contents"
                  ng-class="link_class(section,content)">
                <a class="clickable" ng-click="select(section,content)">
                  {{content.name}}
                </a>
              </li>
            </ul>
          </li>
        </ul>

      </md-sidenav>

      <md-content flex id="main-container" class="main-container" layout="column">

        <!-- Local md content -->
        <div id="main-md"
             class="main markdown-body"
             ng-if="state.active_content.type == 'local-md'">
        </div>

        <!-- Local html content -->
        <div id="main-html"
             class="main"
             ng-if="state.active_content.type == 'local-html'"
             ng-include="state.active_content.path"
             onload="redraw()">
        </div>

      </md-content>

    </div>

  </body>

</html>