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Merge pull request #42 from tomdstanton/Update-O-Nomenclature
Bump to v3.1.0
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docs/source/Databases.rst

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@@ -229,6 +229,9 @@ In Kaptive 3.1.0, we introduced new O-antigen nomenclature in the *Klebsiella* O
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(``Klebsiella_o_locus_primary_reference.gbk``) along wth the publication of this review:
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`O-antigen polysaccharides in Klebsiella pneumoniae: structures and molecular basis for antigenic diversity <https://journals.asm.org/doi/full/10.1128/mmbr.00090-23#T1>`_.
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We have also summarised the O-antigen nomenclature update on the
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`Wyres Lab website <http://wyreslab.com/klebsiella-pneumoniae-o-antigen-genetics-structural-diversity-and-nomenclature/>`_.
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The *Klebsiella* O locus database (``Klebsiella_o_locus_primary_reference.gbk``) contains annotated sequences for 13
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distinct *Klebsiella* O loci.
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@@ -317,9 +320,6 @@ Database Keywords
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*Klebsiella pneumoniae* K locus primary reference database - kpsc_k
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- kp_k
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- k_k
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*Klebsiella pneumoniae* K locus variant reference database - kpsc_k_variant
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- kp_k_variant
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- k_k_variant
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*Klebsiella pneumoniae* O locus primary reference database - kpsc_o
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- kp_o
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- k_o

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