Trying to build with Cargo

[tthomopoulos]

Hi,

I'm trying to build it with Cargo, but I get the following error message:

(base) thomasthomopoulos@Mini-de-Thomas junocam_processing % cargo build
Updating crates.io index
error: failed to get sciimg as a dependency of package junocam_processing v0.1.0 (/Users/thomasthomopoulos/junocam_processing)
Caused by:
failed to load source for dependency sciimg
Caused by:
Unable to update /Users/thomasthomopoulos/junocam_processing/sciimg
Caused by:
failed to read /Users/thomasthomopoulos/junocam_processing/sciimg/Cargo.toml
Caused by:
No such file or directory (os error 2)

Would you have a solution for the sciimg file, because it seems that using Git I can't get the file.

(base) thomasthomopoulos@Mini-de-Thomas junocam_processing % git clone --recursive https://github.com/kmgill/junocam_processing.git

It tells me that :

Cloning into 'junocam_processing'...
remote: Enumerating objects: 504, done.
remote: Counting objects: 100% (504/504), done.
remote: Compressing objects: 100% (321/321), done.
remote: Total 504 (delta 315), reused 352 (delta 169), pack-reused 0
Receiving objects: 100% (504/504), 18.44 MiB | 17.63 MiB/s, done.
Resolving deltas: 100% (315/315), done.
Submodule 'sciimg' (git@github.com:kmgill/sciimg.git) registered for path 'sciimg'
Cloning into '/Users/thomasthomopoulos/junocam_processing/junocam_processing/sciimg'...
git@github.com: Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:kmgill/sciimg.git' into submodule path '/Users/thomasthomopoulos/junocam_processing/junocam_processing/sciimg' failed
Failed to clone 'sciimg'. Retry scheduled
Cloning into '/Users/thomasthomopoulos/junocam_processing/junocam_processing/sciimg'...
git@github.com: Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:kmgill/sciimg.git' into submodule path '/Users/thomasthomopoulos/junocam_processing/junocam_processing/sciimg' failed
Failed to clone 'sciimg' a second time, aborting

Thanks

Thomas

[tthomopoulos]

I was able to install junocam, it was an ssh key problem.

I don't see the -o option when I type --help on Junocam installed, is this normal? Thanks

[kmgill]

Yeah, I removed the -o option in favor of having it determine the output name itself. Not sure if I'll keep it that way, but it was part of an effort to enable multiple images to be processed at once without having a big ugly list of outputs on the command line which may not be properly aligned with the inputs.

[tthomopoulos]

Thanks for the clarification, I understand better.

I am stuck on the execution of Junocam process. I try the example you put (perijove 7), I have the right path to the files, but it shows me the following error.

(base) thomasthomopoulos@Mini-de-Thomas ~ % RUST_BACKTRACE=full junocam process -i /Users/thomasthomopoulos/ImageSet/JNCE_2017192_07C00060_V01-raw.png -m /Users/thomasthomopoulos/DataSet/1583-Metadata.json -f 80 -P 10 -w 2048 -H 2048
thread 'main' panicked at 'Unable to locate juno configuration file', src/config.rs:90:13
stack backtrace:
0: 0x100483c24 - std::backtrace_rs::backtrace::libunwind::trace::h2000fb4d08dbcc59
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5
1: 0x100483c24 - std::backtrace_rs::backtrace::trace_unsynchronized::h2b5e61495350674d
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
2: 0x100483c24 - std::sys_common::backtrace::_print_fmt::h05f5bfbdb3415936
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/sys_common/backtrace.rs:65:5
3: 0x100483c24 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h105074e3d85f800b
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/sys_common/backtrace.rs:44:22
4: 0x10049c544 - core::fmt::write::h34766cf8fff7af1e
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/core/src/fmt/mod.rs:1232:17
5: 0x10048130c - std::io::Write::write_fmt::hd64c4cf6e7adea59
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/io/mod.rs:1684:15
6: 0x100483a38 - std::sys_common::backtrace::_print::hd92783a665d3ebfb
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/sys_common/backtrace.rs:47:5
7: 0x100483a38 - std::sys_common::backtrace::print::h2a6828a537036cf9
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/sys_common/backtrace.rs:34:9
8: 0x100485114 - std::panicking::default_hook::{{closure}}::h4e82ce6ccef941b2
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:271:22
9: 0x100484e6c - std::panicking::default_hook::h29f62f8795c5cb00
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:290:9
10: 0x100485624 - std::panicking::rust_panic_with_hook::h19862cbd0fbda7ba
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:692:13
11: 0x100485518 - std::panicking::begin_panic_handler::{{closure}}::h3f3626935e1669fe
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:581:13
12: 0x100484044 - std::sys_common::backtrace::__rust_end_short_backtrace::h5054ef52bd507d0a
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/sys_common/backtrace.rs:150:18
13: 0x1004852b4 - rust_begin_unwind
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:579:5
14: 0x1004b1bc0 - core::panicking::panic_fmt::h7e47e10600a90221
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/core/src/panicking.rs:64:14
15: 0x1002307f4 - junocam::config::load_configuration::h2bc6ced1b5e2d846
16: 0x10020513c - <junocam::subs::process::Process as junocam::subs::runnable::RunnableSubcommand>::run::h1ec90730436ff34a
17: 0x10020cd84 - junocam::main::h1e4f255c751e13a7
18: 0x100213654 - std::sys_common::backtrace::__rust_begin_short_backtrace::h9230a5e162fe7c1c
19: 0x10020fb04 - std::rt::lang_start::{{closure}}::h39fec511d4fbcb3c
20: 0x10047ca38 - core::ops::function::impls::<impl core::ops::function::FnOnce for &F>::call_once::hf2f6b444963da11f
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/core/src/ops/function.rs:287:13
21: 0x10047ca38 - std::panicking::try::do_call::h9152231fddd58858
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:487:40
22: 0x10047ca38 - std::panicking::try::hcc27eab3b8ee3cb1
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:451:19
23: 0x10047ca38 - std::panic::catch_unwind::hca546a4311ab9871
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panic.rs:140:14
24: 0x10047ca38 - std::rt::lang_start_internal::{{closure}}::h4e65aa71fe685c85
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/rt.rs:148:48
25: 0x10047ca38 - std::panicking::try::do_call::h61aea55fbdf97fc2
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:487:40
26: 0x10047ca38 - std::panicking::try::hcfc3b62fb8f6215e
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:451:19
27: 0x10047ca38 - std::panic::catch_unwind::h61a201e98b56a743
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panic.rs:140:14
28: 0x10047ca38 - std::rt::lang_start_internal::h91996717d3eb1d2a
at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/rt.rs:148:20
29: 0x10020d1c0 - _main

Any idea what it could be? I'm thinking of the Spice configuration I have installed, I specify that I'm discovering the world of programming.

It seems that it can't find a configuration file.

Thanks for your help.

[kmgill]

Ah, back in the source directory, run

mkdir ~/.junodata
cp src/calib/* ~/.junodata

Then make sure you have environment variables set like in scripts/initjnc.sh

[tthomopoulos]

Many thanks, I followed the instructions, but it still gives me an error message. It seems that it can't find the Juno file: pck00010.tpc

The file is in the Juno folder that I installed after the ISIS installation I did on the Mac. Even when running junocam process from the folder where the file is, it does not find it and shows me this error message? Could you help me? Thanks

(base) thomasthomopoulos@Mini-de-Thomas kernels % junocam process -i /Users/thomasthomopoulos/ImageSet/JNCE_2017192_07C00060_V01-raw.png -m /Users/thomasthomopoulos/DataSet/1583-Metadata.json -f 80 -P 10 -w 2048 -H 2048
Failed to locate kernel: kernels/pck/pck00010.tpc
thread 'main' panicked at 'Failed to load spice kernel: "File not found"', src/jcspice.rs:55:37
note: run with RUST_BACKTRACE=1 environment variable to display a backtrace

[kmgill]

First, do a git pull to do an update as I pushed up a change that effects a script that you're about to run...

With the environment variables set as mentioned above, run the script scripts/update_spice_data.sh. That'll take a little while as there are a lot of Spice kernel files that need to copied.

[tthomopoulos]

Many thanks, I will do as indicated