Failure to regenerate v1alpha3/tlsrouterule.go and v1alpha3/tlsroutestatus.go post applyconfigration/ cleanup

[carmal891]

What happened:
Discovered an issue with applyconfiguration generation via applyconfiguration-gen. Issue is around v1alpha3.TLSRoute which could be due to cross-version references to v1alpha2 types. Cross version reference for TLSRouteStatus and TLSRouteRule are present in below files

https://github.com/kubernetes-sigs/gateway-api/blob/main/apis/v1alpha3/tlsroute_types.go#L49
https://github.com/kubernetes-sigs/gateway-api/blob/main/apis/v1alpha3/tlsroute_types.go#L103,

The files applyconfiguration/apis/v1alpha3/tlsrouterule.go and applyconfiguration/apis/v1alpha3/tlsroutestatus.go do not get regenerated after a cleanup of /applyconfiguration dir

What you expected to happen:
The mentioned files should be re-generated via applyconfiguration-gen in the applyconfiguration/ dir (executed via make generate) after a cleanup of the applyconfiguration/ dir

How to reproduce it (as minimally and precisely as possible):

1. Ensure that applyconfiguration/apis/v1alpha3/tlsrouterule.go and applyconfiguration/apis/v1alpha3/tlsroutestatus.go files are present
2. rm -rf applyconfiguration/*
3. make generate
4. Observe that the 2 mentioned files are not regenerated

Anything else we need to know?: