diff --git a/modules/callpeak_macs2.bds b/modules/callpeak_macs2.bds index 431ed8b..ca6ac26 100644 --- a/modules/callpeak_macs2.bds +++ b/modules/callpeak_macs2.bds @@ -113,7 +113,7 @@ string[] _macs2( string tag, string ctl_tag, string fraglen, bool make_sig, \ slopBed -i "$prefix"_FE.bdg -g $chrsz -b 0 | awk '{if ($3 != -1) print $0}' | bedClip stdin $chrsz $fc_bedgraph; \ rm -f "$prefix"_FE.bdg; \ \ - sort -k1,1 -k2,2n $fc_bedgraph > $fc_bedgraph_srt; \ + LC_COLLATE=C sort -k1,1 -k2,2n $fc_bedgraph > $fc_bedgraph_srt; \ bedGraphToBigWig $fc_bedgraph_srt $chrsz $fc_bigwig; \ rm -f $fc_bedgraph $fc_bedgraph_srt; \ \ @@ -123,7 +123,7 @@ string[] _macs2( string tag, string ctl_tag, string fraglen, bool make_sig, \ slopBed -i "$prefix"_ppois.bdg -g $chrsz -b 0 | awk '{if ($3 != -1) print $0}' | bedClip stdin $chrsz $peak_o_dir/$prefix_basename.pval.signal.bedgraph; \ rm -rf "$prefix"_ppois.bdg; \ \ - sort -k1,1 -k2,2n $pval_bedgraph > $pval_bedgraph_srt; \ + LC_COLLATE=C sort -k1,1 -k2,2n $pval_bedgraph > $pval_bedgraph_srt; \ bedGraphToBigWig $pval_bedgraph_srt $chrsz $pval_bigwig; \ \ rm -f $pval_bedgraph $pval_bedgraph_srt; \