fixed dependency

Author: hephaex

vendor/ngc-tensorflow/Dockerfile.20.11-tf2-py3

@@ -1,9 +1,13 @@
-FROM nvcr.io/nvidia/tensorflow:20.12-tf2-py3
+FROM nvcr.io/nvidia/tensorflow:20.11-tf2-py3
 # NVIDIA DIGITS runs on Python 3.6
 
 RUN apt-get update && \
-    apt-get install -y libsm6 libxext6 libxrender-dev
-
+    apt-get install -y libsm6 libxext6 libxrender-dev mercurial libgdal-dev python3-gdal \
+    libsdl-dev libsdl-image1.2-dev libsdl-mixer1.2-dev libsdl-ttf2.0-dev \
+    libsmpeg-dev libportmidi-dev libavformat-dev libswscale-dev
+  
+ENV CPLUS_INCLUDE_PATH=/usr/include/gdal
+ENV C_INCLUDE_PATH=/usr/include/gdal
 ENV DEBIAN_FRONTEND=noninteractive \
     MPLBACKEND=Svg \
     PYTHONUNBUFFERED=1 \
@@ -12,6 +16,8 @@ ENV DEBIAN_FRONTEND=noninteractive \
     mecab_dicdir=/usr/local/lib/mecab/dic/mecab-ko-dic \
     LANG=C.UTF-8
 
+RUN update-alternatives --install /usr/bin/python python /usr/bin/python3 2
+
 # install NLP packages *mecab-ko & khai*
 RUN apt-get update && \
     apt-get install -y \
@@ -44,7 +50,6 @@ RUN echo "Install mecab-ko-dic" && \
     git clone https://bitbucket.org/eunjeon/mecab-python-0.996.git && \
     python3 -m pip install /tmp/mecab-python-0.996
 
-
 # OpenCV
 RUN ln -s /usr/include/libv4l1-videodev.h /usr/include/linux/videodev.h && \
    apt-get install -y \
@@ -75,7 +80,7 @@ RUN ln -s /usr/include/libv4l1-videodev.h /usr/include/linux/videodev.h && \
     rm -rf /var/lib/apt/lists/
 
 WORKDIR /tmp
-ENV OPENCV_VERSION="4.5.0"
+ENV OPENCV_VERSION="4.5.1"
 RUN wget https://github.com/opencv/opencv/archive/${OPENCV_VERSION}.zip && \
     wget -O opencv-contrib.zip https://github.com/opencv/opencv_contrib/archive/${OPENCV_VERSION}.zip && \
     unzip ${OPENCV_VERSION}.zip && \
@@ -100,7 +105,7 @@ RUN wget https://github.com/opencv/opencv/archive/${OPENCV_VERSION}.zip && \
       -D WITH_V4L=ON \
       -D BUILD_TESTS=OFF \
       -D BUILD_PERF_TESTS=OFF \
-      -D OPENCV_EXTRA_MODULES_PATH="../../opencv_contrib-4.5.0/modules" \
+      -D OPENCV_EXTRA_MODULES_PATH="../../opencv_contrib-4.5.1/modules" \
       -D CMAKE_BUILD_TYPE=RELEASE \
       -D CMAKE_INSTALL_PREFIX=$(python3 -c "import sys; print(sys.prefix)") \
       -D PYTHON_EXECUTABLE=$(which python3) \
@@ -113,53 +118,50 @@ RUN wget https://github.com/opencv/opencv/archive/${OPENCV_VERSION}.zip && \
     python3 -m pip install --no-cache-dir opencv-python && \
     rm -fr opencv* 
 
-RUN update-alternatives --install /usr/bin/python python /usr/bin/python3 2
-
-WORKDIR /tmp
-RUN curl https://bootstrap.pypa.io/get-pip.py | python3 && \
-    python3 -m pip install --no-cache-dir -U setuptools pip 
 
 RUN curl -sL https://deb.nodesource.com/setup_10.x | bash - && \
     apt-get update -y && \
     apt-get install -y nodejs
 
 WORKDIR /tmp
-RUN git clone -q --branch=master git://github.com/xianyi/OpenBLAS.git && \
+RUN git clone -q --branch=v0.3.13 git://github.com/xianyi/OpenBLAS.git && \
     cd OpenBLAS && \
     make DYNAMIC_ARCH=1 NO_AFFINITY=1 NUM_THREADS=48 FC=gfortran && \
     make install
 RUN git clone --recursive https://github.com/bodono/scs-python.git  && \
     cd /tmp/scs-python && \
     python setup.py install --scs --gpu
+RUN mkdir -p /opt/oracle && \
+    cd /opt/oracle && \
+    apt-get clean && \
+    rm -rf /var/lib/apt/lists/* && \
+    apt-get update -y && \
+    apt-get install -y --no-install-recommends libaio1 default-libmysqlclient-dev && \
+    wget https://download.oracle.com/otn_software/linux/instantclient/instantclient-basiclite-linuxx64.zip && \
+    unzip instantclient-basiclite-linuxx64.zip && \
+    rm -f instantclient-basiclite-linuxx64.zip && \
+    cd /opt/oracle/instantclient* && \
+    rm -f *jdbc* *occi* *mysql* *README *jar uidrvci genezi adrci && \
+    echo /opt/oracle/instantclient* > /etc/ld.so.conf.d/oracle-instantclient.conf && \
+    ldconfig
 
-COPY ./numpy-1.19.4-cp36-cp36m-manylinux2010_x86_64.whl /tmp
-COPY ./pandas-1.0.4+4.g29edbab4a-cp36-cp36m-linux_x86_64.whl /tmp
-RUN python3 -m pip install --no-cache-dir \ 
-    	    Cython==0.29.21 \
-	    tornado==6.0.4 \
-	    pystan==2.19.1.1 \
-	    pycairo==1.19.0 \
-	    jupyter==1.0.0 \
-	    python-language-server[all] \	    
-	    matplotlib==3.3.3 
-ENV SCIPY_VERSION 1.5.4
+WORKDIR /tmp
+RUN python3 -m pip install --no-cache-dir \
+        Cython==0.29.21 \
+        argon2_cffi==20.1.0
+COPY ./requirements.txt /tmp
+RUN python3 -m pip install --no-cache-dir -r requirements.txt && \
+    rm -f /tmp/*.whl /tmp/requirements.txt
+ENV SCIPY_VERSION 1.6.0
 # Install scipy
 RUN cd /tmp && \
     git clone --branch=v${SCIPY_VERSION} --depth=1 https://github.com/scipy/scipy.git scipy && \
     cd scipy && \
     git checkout -b v${SCIPY_VERSION} && \  
     cp site.cfg.example site.cfg && \
-    python3 -m pip install -U --no-cache-dir \
-        /tmp/numpy-1.19.4-cp36-cp36m-manylinux2010_x86_64.whl \
-    	/tmp/pandas-1.0.4+4.g29edbab4a-cp36-cp36m-linux_x86_64.whl \
-	&& \
-    python3 setup.py install 
-
-WORKDIR /tmp
-COPY ./requirements.txt /tmp
-RUN python3 -m pip install --no-cache-dir --upgrade -r requirements.txt && \
-    python3 -m pip install --no-cache-dir tensorflow_model_analysis && \
-    rm -f /tmp/*.whl /tmp/requirements.txt
+    pip uninstall -y typing && \
+    python3 -m pip install .
+	    
 
 # install git-lfs
 WORKDIR /tmp
@@ -172,7 +174,25 @@ COPY ./service-defs /etc/backend.ai/service-defs
 RUN curl -fL https://github.com/cdr/code-server/releases/download/v3.7.3/code-server-3.7.3-linux-amd64.tar.gz | tar -C /usr/local/lib -xz && \
     mv /usr/local/lib/code-server-3.7.3-linux-amd64 /usr/local/lib/code-server-3.7.3 && \
     ln -s /usr/local/lib/code-server-3.7.3/bin/code-server /usr/local/bin/code-server
+# Install Open MPI
+RUN mkdir /tmp/openmpi && \
+    cd /tmp/openmpi && \
+    wget https://www.open-mpi.org/software/ompi/v4.0/downloads/openmpi-4.0.5.tar.gz && \
+    tar zxf openmpi-4.0.5.tar.gz && \
+    cd openmpi-4.0.5 && \
+    ./configure --enable-orterun-prefix-by-default && \
+    make -j $(nproc) all && \
+    make install && \
+    ldconfig && \
+    rm -rf /tmp/openmpi*
+# Create a wrapper for OpenMPI to allow running as root by default
+RUN mv /usr/local/bin/mpirun /usr/local/bin/mpirun.real && \
+    echo '#!/bin/bash' > /usr/local/bin/mpirun && \
+    echo 'mpirun.real --allow-run-as-root "$@"' >> /usr/local/bin/mpirun && \
+    chmod a+x /usr/local/bin/mpirun
 
+# Configure OpenMPI to run good defaults:
+RUN echo "btl_tcp_if_exclude = lo,docker0" >> /usr/local/etc/openmpi-mca-params.conf
 
 RUN jupyter nbextensions_configurator enable && \
     jupyter contrib nbextension install && \
@@ -191,13 +211,12 @@ RUN jupyter nbextensions_configurator enable && \
 
 RUN apt autoclean && \
     sed -i 's/source \/usr\/local\/nvm\/nvm.sh//' /etc/bash.bashrc && \
-    python3 -m pip uninstall -y  tensorboard-plugin-wit && \
     rm -rf /var/lib/apt/lists/* && \	
     rm -rf /root/.cache && \
     rm -rf /tmp/*
 
 # Install ipython kernelspec
-RUN /usr/bin/python3 -m ipykernel install --display-name "Python 3.6 (NGC 20.12 / TensorFlow 2.3) on Backend.AI" && \
+RUN /usr/bin/python3 -m ipykernel install --display-name "Python 3.6 (NGC 20.11 / TensorFlow 2.3) on Backend.AI" && \
     cat /usr/local/share/jupyter/kernels/python3/kernel.json
 
 # Backend.AI specifics