GRACKLE/NAMESPACE at main · lagillenwater/GRACKLE · GitHub

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# Generated by roxygen2: do not edit by hand

export(GRACKLE)
export(adjustTransitivity)
export(aggregateExpression)
export(aggregateNetworks)
export(alignNetwork)
export(categoricalPrediction)
export(ensemblToHGNC)
export(evaluationWrapper)
export(geneLoadingsEvaluation)
export(imputeExpression)
export(increaseTransitivity)
export(makeDirected)
export(min_max_scale)
export(modulePermutations)
export(networkNoise)
export(noisyImputation)
export(normalize)
export(parallelSimulateExpression)
export(permuteNetwork)
export(plotSimulatedExpression)
export(preserveCorrelation)
export(project_W)
export(randomNetwork)
export(runGRNMF)
export(runNMF)
export(runPLIER)
export(sampleLoadingsEvaluation)
export(similarityCalc)
export(simulateExpression)
export(simulateMetadata)
export(split_data)
import(NMF)
import(PLIER)
import(dplyr)
import(glmnet)
import(matrixStats)
import(nnls)
import(sgnesR)
import(tensorflow)
import(tibble)
import(tidyr)
importFrom(FNN,get.knn)
importFrom(Matrix,Matrix)
importFrom(RColorBrewer,brewer.pal)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(igraph,V)
importFrom(igraph,add_edges)
importFrom(igraph,as_adjacency_matrix)
importFrom(igraph,cluster_louvain)
importFrom(igraph,degree)
importFrom(igraph,degree.sequence.game)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,modularity)
importFrom(igraph,neighbors)
importFrom(igraph,rewire)
importFrom(parallel,detectCores)
importFrom(parallel,mclapply)
importFrom(ppcor,pcor)
importFrom(utils,download.file)
useDynLib(GRACKLE)