fixed paths in manifest files

Author: simongravelle

files/tutorial1/solution/improved.md.lmp

@@ -38,7 +38,7 @@ compute sumcoor12 grp_t1 reduce ave c_coor12
 thermo 1000
 thermo_style custom step temp pe ke etotal &
   press v_n1_in v_n2_in c_sumcoor12
-dump viz all image 100 myimage-*.ppm type type &
+dump viz all image 1000 myimage-*.ppm type type &
   shiny 0.1 box no 0.01 view 0 0 zoom 1.8 fsaa yes size 800 800
 dump_modify viz adiam 1 1 adiam 2 3 acolor 1 &
   turquoise acolor 2 royalblue backcolor white

files/tutorial5/.manifest

@@ -6,36 +6,35 @@
 # the first file will be automatically loaded
 decorate.lmp
 deform.lmp
-reaxCHOFe.inc
 relax.lmp
 silica.data
 
 # 2) solution files
 # only downloaded on request
-decorate-H.histo
-decorate.lmp
-decorate.log
-decorate-O.histo
-decorate.png
-decorate-Si.histo
-decorate.species
-deform.data
-deform.lmp
-deform.log
-deform-mod.data
-deform-O.histo
-deform.png
-deform-Si.histo
-deform.species
-reaxCHOFe.inc
-relax.data
-relax.lmp
-relax.log
-relax-O.histo
-relax.png
-relax-Si.histo
-relax.species
-silica.data
+solution/decorate-H.histo
+solution/decorate.lmp
+solution/decorate.log
+solution/decorate-O.histo
+solution/decorate.png
+solution/decorate-Si.histo
+solution/decorate.species
+solution/deform.data
+solution/deform.lmp
+solution/deform.log
+solution/deform-mod.data
+solution/deform-O.histo
+solution/deform.png
+solution/deform-Si.histo
+solution/deform.species
+solution/reaxCHOFe.inc
+solution/relax.data
+solution/relax.lmp
+solution/relax.log
+solution/relax-O.histo
+solution/relax.png
+solution/relax-Si.histo
+solution/relax.species
+solution/silica.data
 
 # 3) support files
-
+reaxCHOFe.inc

files/tutorial6/.manifest

@@ -8,24 +8,24 @@ cracking.lmp
 gcmc.lmp
 generate.lmp
 H2O.mol
-SiO.1990.vashishta
 
 # 2) solution files
 # only downloaded on request
-cracking.data
-cracking-mod.data
-gcmc.lmp
-generate.data
-generate.log
-SiO.1990.vashishta
-cracking.lmp
-cracking.png
-gcmc.log
-generate.png
-cracking.log
-gcmc.png
-generate.lmp
-H2O.mol
+solution/cracking.data
+solution/cracking-mod.data
+solution/gcmc.lmp
+solution/generate.data
+solution/generate.log
+solution/SiO.1990.vashishta
+solution/cracking.lmp
+solution/cracking.png
+solution/gcmc.log
+solution/generate.png
+solution/cracking.log
+solution/gcmc.png
+solution/generate.lmp
+solution/H2O.mol
 
 # 3) support files
+SiO.1990.vashishta
 

files/tutorial7/.manifest

@@ -7,20 +7,19 @@
 free-sampling.lmp
 umbrella-sampling.meta
 umbrella-sampling.lmp
-wham
 
 # 2) solution files
 # only downloaded on request
-free-sampling.dat
-free-sampling.lmp
-free-sampling.log
-free-sampling.png
-umbrella-sampling.dat
-umbrella-sampling.lmp
-umbrella-sampling.log
-umbrella-sampling.png
-wham
-umbrella-sampling.meta
+solution/free-sampling.dat
+solution/free-sampling.lmp
+solution/free-sampling.log
+solution/free-sampling.png
+solution/umbrella-sampling.dat
+solution/umbrella-sampling.lmp
+solution/umbrella-sampling.log
+solution/umbrella-sampling.png
+solution/wham
+solution/umbrella-sampling.meta
 
 # 3) support files
-
+wham

files/tutorial8/.manifest

@@ -16,30 +16,29 @@ polymerize.lmp
 P-P_post.mol
 P-P_pre.mol
 P-P.rxnmap
-solution
 styrene.mol
 
 # 2) solution files
 # only downloaded on request
-CNT.data
-mixing.log
-mixing.restart
-M-M_pre.mol
-M-P_post.mol
-M-P.rxnmap
-polymerize.log
-P-P_post.mol
-P-P.rxnmap
-mixing.data
-mixing.lmp
-mixing.png
-M-M_post.mol
-M-M.rxnmap
-M-P_pre.mol
-polymerize.data
-polymerize.lmp
-polymerize.png
-P-P_pre.mol
-styrene.mol
+solution/CNT.data
+solution/mixing.log
+solution/mixing.restart
+solution/M-M_pre.mol
+solution/M-P_post.mol
+solution/M-P.rxnmap
+solution/polymerize.log
+solution/P-P_post.mol
+solution/P-P.rxnmap
+solution/mixing.data
+solution/mixing.lmp
+solution/mixing.png
+solution/M-M_post.mol
+solution/M-M.rxnmap
+solution/M-P_pre.mol
+solution/polymerize.data
+solution/polymerize.lmp
+solution/polymerize.png
+solution/P-P_pre.mol
+solution/styrene.mol
 
 # 3) folders not known to LAMMPS GUI will be skipped