homogeneized legends

Author: simongravelle

lammps-tutorials.tex

@@ -1949,9 +1949,9 @@ \subsubsection{Preparing the water reservoir}
 \begin{figure}
 \centering
 \includegraphics[width=\linewidth]{PEG-density}
-\caption{a) Temperature ($T$) of the water reservoir from
-\hyperref[all-atom-label]{Tutorial 3} as a function of the ($t$).  The horizontal dashed line is
-the target temperature of 300\,K.  b) Evolution of the system density ($\rho$) with $t$.}
+\caption{a) Temperature, $T$, of the water reservoir from \hyperref[all-atom-label]{Tutorial 3}
+as a function of the time, $t$.  The horizontal dashed line is the target temperature of 300\,K.
+b) Evolution of the system density, $\rho$, with $t$.}
 \label{fig:PEG-density}
 \end{figure}
 
@@ -2678,9 +2678,9 @@ \subsubsection{System preparation}
 \begin{figure}
 \centering
 \includegraphics[width=\linewidth]{NANOSHEAR-equilibration}
-\caption{a)~Pressure $p$ of the nanosheared electrolyte system
+\caption{a)~Pressure, $p$, of the nanosheared electrolyte system
 simulated in \hyperref[sheared-confined-label]{Tutorial 4} as a function of the
-time $t$.  b)~Distance between the walls $\Delta z$ as a function of time $t$.}
+time, $t$.  b)~Distance between the walls, $\Delta z$, as a function of $t$.}
 \label{fig:NANOSHEAR-equilibration}
 \end{figure}
 
@@ -2963,10 +2963,10 @@ \subsubsection{Prepare and relax}
 \begin{figure}
 \centering
 \includegraphics[width=\linewidth]{SIO-charge}
-\caption{a) Average charge per atom of the silicon $q_\text{Si}$ atoms as
-a function of time $t$ during equilibration of the $\text{SiO}_2$ system
+\caption{a) Average charge per atom of the silicon, $q_\text{Si}$, atoms as
+a function of time, $t$, during equilibration of the $\text{SiO}_2$ system
 from \hyperref[reactive-silicon-dioxide-label]{Tutorial 5}.  b) Volume of the
-system $V$ as a function of time $t$.}
+system, $V$, as a function of $t$.}
 \label{fig:SIO-charge}
 \end{figure}
 
@@ -2985,7 +2985,7 @@ \subsubsection{Prepare and relax}
 \caption{a) Probability distributions of charge of silicon (positive, blue) and oxygen
 (negative, orange) atoms during the equilibration of the $\text{SiO}_2$ system
 from \hyperref[reactive-silicon-dioxide-label]{Tutorial 5}.  b) Same probability distributions
-after the deformation.}
+as in panel (a) after the deformation.}
 \label{fig:SIO-distribution}
 \end{figure}
 
@@ -3037,10 +3037,10 @@ \subsubsection{Deform the structure}
 
 \begin{figure}
 \includegraphics[width=\linewidth]{SIO-deformed-charge}
-\caption{a) Average charge per atom of the silicon $q_\text{Si}$ atoms as
-a function of time $t$ during deformation of the $\text{SiO}_2$ system
-from \hyperref[reactive-silicon-dioxide-label]{Tutorial 5}.  b) Temperature $T$ of the
-system as a function of time $t$.}
+\caption{a) Average charge per atom of the silicon, $q_\text{Si}$, atoms as
+a function of time, $t$, during deformation of the $\text{SiO}_2$ system
+from \hyperref[reactive-silicon-dioxide-label]{Tutorial 5}.  b) Temperature, $T$, of the
+system as a function of $t$.}
 \label{fig:SIO-deformed-charge}
 \end{figure}
 
@@ -3323,9 +3323,9 @@ \subsubsection{Generation of the silica block}
 \begin{figure}
 \centering
 \includegraphics[width=\linewidth]{GCMC-dimension}
-\caption{a) Temperature $T$ as a function of time $t$ during the annealing
+\caption{a) Temperature, $T$, as a function of time, $t$, during the annealing
 of the silica system from \hyperref[gcmc-silica-label]{Tutorial 6}.
-b) System density $\rho$ during the annealing process.  The vertical dashed lines
+b) System density, $\rho$, during the annealing process.  The vertical dashed lines
 mark the transition between the different phases of the simulation.}
 \label{fig:GCMC-dimension}
 \end{figure}
@@ -3849,8 +3849,8 @@ \subsubsection{Method 1: Free sampling}
 \begin{figure}
 \centering
 \includegraphics[width=\linewidth]{US-density}
-\caption{a) Fluid density $\rho$ along the $x$ direction.
-b) Potential $U$ as a function of $x$ measured using free sampling (blue disks)
+\caption{a) Fluid density, $\rho$, along the $x$ direction.
+b) Potential, $U$, as a function of $x$ measured using free sampling (blue disks)
 compared to the imposed potential given in Eq.~\eqref{eq:U} (dark line).
 Here, $U_0 = 0.36~\text{kcal/mol}$, $\delta = 1.0~\text{\AA{}}$, $x_0 = 10~\text{\AA{}}$,
 and the measured reference density in the reservoir is $\rho_\text{bulk} = 0.0009~\text{\AA{}}^{-3}$.} % SG: check units of rho bulk
@@ -4031,7 +4031,7 @@ \subsubsection{Method 2: Umbrella sampling}
 \begin{figure}
 \centering
 \includegraphics[width=\linewidth]{US-free-energy}
-\caption{The potential $U$ as a function of $x$, measured using umbrella
+\caption{The potential, $U$, as a function of $x$, measured using umbrella
 sampling during \hyperref[umbrella-sampling-label]{Tutorial 7} (blue disks),
 is compared to the imposed potential given in Eq.~\eqref{eq:U}
 (dark line).  Parameters are $U_0 = 2.38~\text{kcal/mol}$, $\delta = 1.0~\text{\AA{}}$,