orgaquant.rec

Bootstrap: docker
From: debian:buster-slim


%runscript
    cd /home/user/OrgaQuant
	streamlit run orgaquant.py
    

%post
    apt-get update
    apt-get install -y python3 python3-pip git wget libsm6 libxext6 libxrender-dev
    pip3 install \
    tensorflow-gpu==1.14 \
    keras-resnet==0.2.0 \
    cython \
    keras \
    matplotlib \
    opencv-python \
    progressbar2 \
    streamlit
    mkdir /home/user
    cd /home/user
    git clone https://github.com/TKassis/OrgaQuant.git
    cd OrgaQuant
    python3 setup.py build_ext --inplace
    cd trained_models
    wget https://github.com/TKassis/OrgaQuant/releases/download/v0.1/orgaquant_intestinal_v2.h5