|
1 | 1 | # RiboNucleic Acid Language Model - RiNALMo |
2 | 2 |
|
3 | | -### [Paper](https://arxiv.org/abs/2403.00043) | [Weights](https://zenodo.org/records/10725749) |
| 3 | +### [Paper](https://arxiv.org/abs/2403.00043) | [Weights](https://zenodo.org/records/15043668) |
4 | 4 |
|
5 | 5 | [Rafael Josip Penić](https://www.fer.unizg.hr/en/rafael_josip.penic)<sup>1</sup>, |
6 | 6 | [Tin Vlašić](https://sites.google.com/view/tinvlasic)<sup>2</sup>, |
@@ -65,34 +65,34 @@ conda activate rinalmo |
65 | 65 | ```bash |
66 | 66 | mkdir weights |
67 | 67 | cd weights |
68 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_pretrained.pt # 650M params |
69 | | -wget https://zenodo.org/records/10725749/files/rinalmo_mega_pretrained.pt # 150M params |
70 | | -wget https://zenodo.org/records/10725749/files/rinalmo_micro_pretrained.pt # 35M params |
| 68 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_pretrained.pt # 650M params |
| 69 | +wget https://zenodo.org/records/15043668/files/rinalmo_mega_pretrained.pt # 150M params |
| 70 | +wget https://zenodo.org/records/15043668/files/rinalmo_micro_pretrained.pt # 35M params |
71 | 71 | ``` |
72 | 72 | 4. Download fine-tuned weights. |
73 | 73 | ```bash |
74 | 74 | # Download fine-tuned weights for secondary structure prediction. |
75 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_ss_archiveII-16s_ft.pt |
76 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_ss_archiveII-23s_ft.pt |
77 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_ss_archiveII-5s_ft.pt |
78 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_ss_archiveII-srp_ft.pt |
79 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_ss_archiveII-grp1_ft.pt |
80 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_ss_archiveII-telomerase_ft.pt |
81 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_ss_archiveII-tmRNA_ft.pt |
82 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_ss_archiveII-tRNA_ft.pt |
83 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_ss_archiveII-RNaseP_ft.pt |
84 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_ss_bprna_ft.pt |
| 75 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_ss_archiveII-16s_ft.pt |
| 76 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_ss_archiveII-23s_ft.pt |
| 77 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_ss_archiveII-5s_ft.pt |
| 78 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_ss_archiveII-srp_ft.pt |
| 79 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_ss_archiveII-grp1_ft.pt |
| 80 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_ss_archiveII-telomerase_ft.pt |
| 81 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_ss_archiveII-tmRNA_ft.pt |
| 82 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_ss_archiveII-tRNA_ft.pt |
| 83 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_ss_archiveII-RNaseP_ft.pt |
| 84 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_ss_bprna_ft.pt |
85 | 85 |
|
86 | 86 | # Download fine-tuned weights for splice-site prediction. |
87 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_splice_acceptor_ft.pt |
88 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_splice_donor_ft.pt |
| 87 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_splice_acceptor_ft.pt |
| 88 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_splice_donor_ft.pt |
89 | 89 |
|
90 | 90 | # Download fine-tuned weights for mean ribosome loading prediction. |
91 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_mrl_ft.pt |
| 91 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_mrl_ft.pt |
92 | 92 |
|
93 | 93 | # Download fine-tuned weights for ncRNA functional family classification. |
94 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_ncrna_class_0_noise_ft.pt |
95 | | -wget https://zenodo.org/records/10725749/files/rinalmo_giga_ncrna_class_200_noise_ft.pt |
| 94 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_ncrna_class_0_noise_ft.pt |
| 95 | +wget https://zenodo.org/records/15043668/files/rinalmo_giga_ncrna_class_200_noise_ft.pt |
96 | 96 |
|
97 | 97 | cd .. |
98 | 98 | ``` |
|
0 commit comments