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Fix env variable
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.github/workflows/jamo-deploy.yml

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@@ -26,7 +26,7 @@ jobs:
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uses: docker/login-action@v3
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with:
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registry: registry.nersc.gov
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username: ${{ env.REGISTRY_USERNAME }}
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username: ${{ vars.REGISTRY_USERNAME }}
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password: ${{ secrets.REGISTRY_PASSWORD }}
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- name: Build and push image

data_management/jamo/jat/src/jat/analysis.py

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@@ -281,7 +281,6 @@ class Analysis(MongoRestful):
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'Resequencing']
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def __init__(self, config=None):
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# config should be required, but when config added, needed to default to None
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if config is not None:
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self.config = config

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