gene-function-registry/schema.json at main · legumeinfo/gene-function-registry · GitHub

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{
    "type": "object",
    "properties": {
      "classical_locus": {
        "description": "Name of locus if available from classical genetic studies",
        "type": "string"
      },
      "gene_symbols": {
        "description": "List of gene symbols if available from literature",
        "type": "array",
        "items": {
          "type": "string"
        }
      },
      "gene_symbol_long": {
        "description": "Descriptive name of gene symbol if available",
        "type": "string"
      },
      "gene_model_pub_name": {
        "description": "Gene name from publication",
        "type": "string"
      },
      "gene_model_full_id": {
        "description": "Gene name in Data Store, with full prefix",
        "type": "string"
      },
      "confidence": {
        "description": "Confidence of association",
        "minimum": 1,
        "maximum": 5,
        "type": "integer"
      },
      "curators": {
        "description": "Name of curators who worked on this",
        "type": "array",
        "items": {
          "type": "string"
        }
      },
      "comments": {
        "description": "Free text comments",
        "type": "array",
        "items": {
          "type": "string"
        }
      },
      "phenotype_synopsis": {
        "description": "Brief free-text phenotype description, e.g. \"Seed raffinose concentration\" or \"photoperiod insensitivity to short day conditions\"",
        "type": "string"
      },
      "traits": {
        "description": "List of traits associated with this gene",
        "type": "array",
        "items": {
          "type": "object",
          "properties": {
            "entity_name": {
              "description": "Short descriptive name of the ontology accession",
              "type": "string"
            },
            "entity": {
              "description": "Ontology accession for the trait",
              "type": "string"
            },
            "quality_name": {
              "description": "Short descriptive name for accession quality term",
              "type": "string"
            },
            "quality": {
              "description": "Ontology accession for the quality term",
              "type": "string"
            },
            "relation_name": {
              "description": "Short descriptive name for accession relation term",
              "type": "string"
            },
            "relation": {
              "description": "Ontology accession for the relation term",
              "type": "string"
            }
          }
        }
      },
      "references": {
        "description": "List of references for this association",
        "type": "array",
        "items": {
          "type": "object",
          "properties": {
            "citation": {
              "description": "Citation in the format \"LastName, LastName et al., YEAR\"",
              "type": "string"
            },
            "doi": {
              "description": "DOI for the publication",
              "type": "string"
            },
            "pmid": {
              "description": "PubMed ID for the publication",
              "minimum": 1,
              "type": "integer"
            }
          }
        }
      }
    },
    "additionalProperties": false,
    "required": [
      "confidence",
      "gene_model_full_id",
      "gene_model_pub_name",
      "phenotype_synopsis",
      "references",
      "traits"
    ]
}