Merge pull request #958 from matthewwiese/main

Update dependencies and Dockerfiles

Author: matthewwiese

chromosome/Dockerfile

@@ -1,4 +1,4 @@
-FROM python:3.13.3
+FROM python:3.13.7-slim-trixie
 
 # install gcc and other build requirements
 RUN apt-get update && \

chromosome/chromosome/__init__.py

@@ -5,7 +5,7 @@ def int_or_str(value):
         return value
 
 
-__version__ = "1.1.4"
+__version__ = "1.2.0"
 VERSION = tuple(map(int_or_str, __version__.split(".")))
 
 __schema_version__ = "1.1.0"

chromosome/requirements.txt

@@ -6,43 +6,43 @@
 #
 aiohappyeyeballs==2.6.1
     # via aiohttp
-aiohttp==3.11.18
+aiohttp==3.12.15
     # via
     #   aiohttp-cors
     #   chromosome (setup.py)
 aiohttp-cors==0.8.1
     # via chromosome (setup.py)
-aiosignal==1.3.2
+aiosignal==1.4.0
     # via aiohttp
 attrs==25.3.0
     # via aiohttp
-frozenlist==1.6.0
+frozenlist==1.7.0
     # via
     #   aiohttp
     #   aiosignal
-grpcio==1.71.0
+grpcio==1.74.0
     # via
     #   chromosome (setup.py)
     #   grpcio-tools
-grpcio-tools==1.71.0
+grpcio-tools==1.74.0
     # via chromosome (setup.py)
 idna==3.10
     # via yarl
-multidict==6.4.3
+multidict==6.6.4
     # via
     #   aiohttp
     #   yarl
-propcache==0.3.1
+propcache==0.3.2
     # via
     #   aiohttp
     #   yarl
-protobuf==5.29.4
+protobuf==6.32.0
     # via grpcio-tools
-redis==6.0.0
+redis==6.4.0
     # via chromosome (setup.py)
 uvloop==0.21.0
     # via chromosome (setup.py)
-yarl==1.20.0
+yarl==1.20.1
     # via aiohttp
 
 # The following packages are considered to be unsafe in a requirements file:

chromosome_region/Dockerfile

@@ -1,4 +1,4 @@
-FROM python:3.13.3
+FROM python:3.13.7-slim-trixie
 
 # install gcc and other build requirements
 RUN apt-get update && \

chromosome_region/chromosome_region/__init__.py

@@ -5,7 +5,7 @@ def int_or_str(value):
         return value
 
 
-__version__ = "1.1.4"
+__version__ = "1.2.0"
 VERSION = tuple(map(int_or_str, __version__.split(".")))
 
 __schema_version__ = "1.1.0"

chromosome_region/requirements.txt

@@ -6,43 +6,43 @@
 #
 aiohappyeyeballs==2.6.1
     # via aiohttp
-aiohttp==3.11.18
+aiohttp==3.12.15
     # via
     #   aiohttp-cors
     #   chromosome_region (setup.py)
 aiohttp-cors==0.8.1
     # via chromosome_region (setup.py)
-aiosignal==1.3.2
+aiosignal==1.4.0
     # via aiohttp
 attrs==25.3.0
     # via aiohttp
-frozenlist==1.6.0
+frozenlist==1.7.0
     # via
     #   aiohttp
     #   aiosignal
-grpcio==1.71.0
+grpcio==1.74.0
     # via
     #   chromosome_region (setup.py)
     #   grpcio-tools
-grpcio-tools==1.71.0
+grpcio-tools==1.74.0
     # via chromosome_region (setup.py)
 idna==3.10
     # via yarl
-multidict==6.4.3
+multidict==6.6.4
     # via
     #   aiohttp
     #   yarl
-propcache==0.3.1
+propcache==0.3.2
     # via
     #   aiohttp
     #   yarl
-protobuf==5.29.4
+protobuf==6.32.0
     # via grpcio-tools
-redis==6.0.0
+redis==6.4.0
     # via chromosome_region (setup.py)
 uvloop==0.21.0
     # via chromosome_region (setup.py)
-yarl==1.20.0
+yarl==1.20.1
     # via aiohttp
 
 # The following packages are considered to be unsafe in a requirements file:

chromosome_search/Dockerfile

@@ -1,4 +1,4 @@
-FROM python:3.13.3
+FROM python:3.13.7-slim-trixie
 
 # install gcc and other build requirements
 RUN apt-get update && \

chromosome_search/chromosome_search/__init__.py

@@ -5,7 +5,7 @@ def int_or_str(value):
         return value
 
 
-__version__ = "1.1.4"
+__version__ = "1.2.0"
 VERSION = tuple(map(int_or_str, __version__.split(".")))
 
 __schema_version__ = "1.1.0"

chromosome_search/requirements.txt

@@ -6,43 +6,43 @@
 #
 aiohappyeyeballs==2.6.1
     # via aiohttp
-aiohttp==3.11.18
+aiohttp==3.12.15
     # via
     #   aiohttp-cors
     #   chromosome_search (setup.py)
 aiohttp-cors==0.8.1
     # via chromosome_search (setup.py)
-aiosignal==1.3.2
+aiosignal==1.4.0
     # via aiohttp
 attrs==25.3.0
     # via aiohttp
-frozenlist==1.6.0
+frozenlist==1.7.0
     # via
     #   aiohttp
     #   aiosignal
-grpcio==1.71.0
+grpcio==1.74.0
     # via
     #   chromosome_search (setup.py)
     #   grpcio-tools
-grpcio-tools==1.71.0
+grpcio-tools==1.74.0
     # via chromosome_search (setup.py)
 idna==3.10
     # via yarl
-multidict==6.4.3
+multidict==6.6.4
     # via
     #   aiohttp
     #   yarl
-propcache==0.3.1
+propcache==0.3.2
     # via
     #   aiohttp
     #   yarl
-protobuf==5.29.4
+protobuf==6.32.0
     # via grpcio-tools
-redis==6.0.0
+redis==6.4.0
     # via chromosome_search (setup.py)
 uvloop==0.21.0
     # via chromosome_search (setup.py)
-yarl==1.20.0
+yarl==1.20.1
     # via aiohttp
 
 # The following packages are considered to be unsafe in a requirements file:

dscensor/Dockerfile

@@ -1,4 +1,4 @@
-FROM python:3.11-slim-buster
+FROM python:3.13.7-slim-trixie
 
 # install gcc and other build requirements
 RUN apt-get update && \