Interactive web applications for single-cell data. (LIS fork)
GitHub repository -
See the README for discussion of our LIS changes.
Running instances:
Medicago truncatula - Meliloti vs. Mock Inoculated Root
https://shinycell.legumeinfo.org/medtr.A17.gnm5.ann1_6.expr.Cervantes-Perez_Thibivilliers_2022/
(dev) http://dev.lis.ncgr.org:50080/shiny/medtr.A17.gnm5.ann1_6.expr.Cervantes-Perez_Thibivilliers_2022/
Glycine max - Nodules vs. Root Seedlings
https://shinycell.legumeinfo.org/glyma.expr.Cervantes-Perez_Zogli_2024/
(dev) http://dev.lis.ncgr.org:50080/shiny/glyma.expr.Cervantes-Perez_Zogli_2024/
R scripts for building our specific applications now live in LIS-apps/.
Add more datasets for more species.
Update the URL on the fly after a user selection, to enable copying the application state to send to colleagues.
Ability to POST a longer list of genes as default choices for the Gene Name dropdown menus, and use genes[1] and genes[2] in place of gene1 & gene2.
Fix whatever is causing the warning messages (visible in the R console when running locally, and probably in the shiny-server logs).