build

Fixed rDNA tests and updated GitHub Action workflow #135

	name: build

	on: [push, pull_request, workflow_dispatch]

	jobs:
	build-check:
	name: Build
	runs-on: ubuntu-latest

	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	# ---- Java / Gradle ----
	- name: Validate Gradle wrapper
	uses: gradle/actions/wrapper-validation@v4

	- name: Set up Java
	uses: actions/setup-java@v3
	with:
	distribution: temurin
	java-version: 11
	cache: gradle

	- name: Set up Gradle
	uses: gradle/gradle-build-action@v2.4.2

	# ---- R ----
	- name: Set up R
	uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- name: Install R dependencies for build
	uses: r-lib/actions/setup-r-dependencies@v2
	with:
	cache-version: 5
	needs: build
	working-directory: rDNA/rDNA
	extra-packages: \|
	any::roxygen2

	# ---- LaTeX / pandoc ----
	- name: Set up TinyTeX
	uses: r-lib/actions/setup-tinytex@v2

	- name: Install LaTeX packages
	run: tlmgr install urlbst

	- name: Set up pandoc
	uses: r-lib/actions/setup-pandoc@v2

	- name: Check pandoc version
	run: pandoc --version

	# ---- Build everything ----
	- name: Build all components with Gradle
	run: ./gradlew build

	# ---- Upload artifacts ----
	- name: Upload bibliography artifacts
	uses: actions/upload-artifact@v4
	with:
	name: bibliography
	path: build/bibliography.*

	- name: Upload DNA JAR
	uses: actions/upload-artifact@v4
	with:
	name: dna-jar
	path: build/*.jar

	- name: Upload rDNA source package
	uses: actions/upload-artifact@v4
	with:
	name: rDNA-package
	path: build/*.tar.gz

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