Release minigraph-0.12 (r389)

Author: lh3

NEWS.md

@@ -1,3 +1,29 @@
+Release 0.12-r389 (26 October 2020)
+-----------------------------------
+
+Notable changes:
+
+ * Improve alignments towards ends of graph segments. If there is an SV close to
+   the ends but not at the ends, older versions may produce an excessively
+   large bubble including high-identity matches.
+
+ * Heuristically accelerates alignment in complex subgraphs by skipping
+   many unnecessary sequence-aware graph traversals. This speeds up graph
+   generation for CHM13 by three folds without obviously affecting accuracy.
+
+ * Added option --inv to optionally disable inversions. Graph traversal is hard
+   with inversions.
+
+ * Fixed the bug that prevents large -K.
+
+ * Apply option -K4g to the asm preset.
+
+ * Added option --write-mz to output the positions of minimizer anchors.
+
+(26 October 2020, r389)
+
+
+
 Release 0.11-r371 (13 September 2020)
 -------------------------------------
 

minigraph.1

@@ -1,4 +1,4 @@
-.TH minigraph 1 "23 October 2020" "minigraph-0.11-dirty (r381)" "Bioinformatics tools"
+.TH minigraph 1 "26 October 2020" "minigraph-0.12 (r389)" "Bioinformatics tools"
 
 .SH NAME
 .PP

minigraph.h

@@ -4,7 +4,7 @@
 #include <stdint.h>
 #include "gfa.h"
 
-#define MG_VERSION "0.11-r388-dirty"
+#define MG_VERSION "0.12-r389"
 
 #define MG_M_SPLICE       0x10
 #define MG_M_SR           0x20