Fix missing CLI executables in quippy-ase wheel (#703) (#704) * Fix missing CLI executables in quippy-ase wheel (#703) Bundle quip, gap_fit, and md executables in the wheel by: - Add [project.scripts] entry points to pyproject.toml for CLI commands - Create install_executables.py to copy executables during meson install - Update meson.build to run install script via meson.add_install_script() - Improve cli.py error handling with helpful messages when executables missing - Add CIBW_TEST_COMMAND to verify executables are bundled and functional The executables are copied to the quippy package directory during install, and delocate/auditwheel will bundle the required shared libraries. Co-Authored-By: Claude Opus 4.5 * Use custom_target instead of install script for CLI executables The meson.add_install_script() approach wasn't working with meson-python wheel builds. Switch to using custom_target with install: true to copy executables during the build phase, which properly integrates with meson-python's wheel building process. Co-Authored-By: Claude Opus 4.5 * Add Programs directory to library path for auditwheel/delocate The gap_fit executable links against libgap_fit.so which is in the Programs build directory. Add this path to LD_LIBRARY_PATH (Linux) and QUIP_LIB_PATH (macOS) so auditwheel/delocate can find and bundle it. Co-Authored-By: Claude Opus 4.5 * Ignore exit status when testing CLI executables QUIP executables may exit non-zero even on --help, so use || true to still run them (verifying they're functional) without failing on non-zero exit status. Co-Authored-By: Claude Opus 4.5 * Simplify executable copying and fix hanging test - Use fs.copyfile() instead of find_program() + custom_target This is simpler and avoids potential issues with find_program() - Remove executable --help tests that hang on Linux The md --help command hangs waiting for input on Linux, causing 6-hour CI timeout. Just verify files exist instead. Co-Authored-By: Claude Opus 4.5 * Fix scipy build from source in wheel tests scipy 1.17+ only provides wheels for manylinux_2_27+, so on our manylinux2014 container it builds from source. This requires: 1. A Fortran compiler (gcc-gfortran) 2. OpenBLAS development files that scipy can find Install scipy-openblas32 via CIBW_TEST_REQUIRES_LINUX, which provides the pkg-config files scipy needs to find OpenBLAS during its build. Also install gcc-gfortran via CIBW_BEFORE_TEST_LINUX. Co-Authored-By: Claude Opus 4.5 * Skip Python 3.13+ on Linux due to scipy wheel compatibility scipy only provides manylinux_2_27+ wheels for Python 3.13+, but we use manylinux2014 for broader Linux compatibility. For Python 3.9-3.12, scipy has manylinux2014 wheels available. macOS wheels continue to support Python 3.13+ since scipy has compatible wheels for those platforms. Co-Authored-By: Claude Opus 4.5 * Fix CI tests by setting BUILDDIR env var for test discovery Add BUILDDIR environment variable to build.yml so tests find executables in the main build directory instead of the quippy package. Also add wheel verification step to help debug executable bundling issues. Co-Authored-By: Claude Opus 4.5 * Install OpenBLAS dev headers before wheel tests on Linux scipy doesn't provide manylinux2014 wheels anymore, so pip builds it from source when installing test dependencies. This requires OpenBLAS development headers to be available in the test container. Co-Authored-By: Claude Opus 4.5 * Skip Python 3.11+ on manylinux due to scipy wheel compatibility scipy 1.17+ only provides manylinux_2_27 wheels (not manylinux2014), which are incompatible with our manylinux2014-based builds. Instead of trying to build scipy from source (which fails due to OpenBLAS pkg-config issues), we skip Python 3.11+ on Linux. macOS wheels for all Python versions are still built. Linux users on Python 3.11+ can still install from source with pip. Co-Authored-By: Claude Opus 4.5 * Add manylinux_2_28 matrix entry for Python 3.11+ Linux wheels Use a matrix with two Linux configurations: - manylinux2014 for Python 3.9-3.10 (broader OS compatibility) - manylinux_2_28 for Python 3.11+ (scipy wheel compatibility) This provides Linux wheels for all Python versions while maintaining compatibility with older distributions for 3.9-3.10. Co-Authored-By: Claude Opus 4.5 * Fix manylinux_2_28 package names (remove optional netcdf/hdf5) netcdf-devel and hdf5-devel are not available in AlmaLinux 8 base repos. Since they're optional dependencies, remove them for manylinux_2_28. Only openblas-devel and lapack-devel are required for the core build. Co-Authored-By: Claude Opus 4.5 --------- Co-authored-by: Claude Opus 4.5

pip install quippy-ase does not make quip and gap_fit any more? #703

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