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Hello Pierre,
Thank you for such a wonderful application.
But whenever I try to run jvarkit, I get the following error:
JVARKIT
=======
Author : Pierre Lindenbaum Phd. Institut du Thorax. Nantes. France.
Exception in thread "main" java.lang.UnsupportedClassVersionError: htsjdk/samtools/util/CloserUtil has been compiled by a more recent version of the Java Runtime (class file version 61.0), this version of the Java Runtime only recognizes class file versions up to 55.0
at java.base/java.lang.ClassLoader.defineClass1(Native Method)
at java.base/java.lang.ClassLoader.defineClass(ClassLoader.java:1016)
at java.base/java.security.SecureClassLoader.defineClass(SecureClassLoader.java:174)
at java.base/jdk.internal.loader.BuiltinClassLoader.defineClass(BuiltinClassLoader.java:802)
at java.base/jdk.internal.loader.BuiltinClassLoader.findClassOnClassPathOrNull(BuiltinClassLoader.java:700)
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClassOrNull(BuiltinClassLoader.java:623)
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:581)
at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:521)
at com.github.lindenb.jvarkit.util.JVarkitVersion.<init>(JVarkitVersion.java:97)
at com.github.lindenb.jvarkit.util.JVarkitVersion.getInstance(JVarkitVersion.java:129)
at com.github.lindenb.jvarkit.tools.jvarkit.JvarkitCentral.usageMain(JvarkitCentral.java:344)
at com.github.lindenb.jvarkit.tools.jvarkit.JvarkitCentral.usage(JvarkitCentral.java:365)
at com.github.lindenb.jvarkit.tools.jvarkit.JvarkitCentral.run(JvarkitCentral.java:717)
at com.github.lindenb.jvarkit.tools.jvarkit.JvarkitCentral.main(JvarkitCentral.java:776)
As I understand, this has something to do with CloserUtil from samtools. So do I re-install samtools with lower version of Java ? (that would be a nightmare for other pipelines running in my server)...what would your suggestion ?
Regards,
Sangram
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