Merge pull request #43 from linkml/fixed-prefixes

cmungall · web-flow · commit 0522a5a3fa9f · 2026-01-30T18:13:43.000-08:00
Remove legacy cvs prefix mappings
diff --git a/docs/schema/valuesets.yaml b/docs/schema/valuesets.yaml
@@ -68945,7 +68945,7 @@ classes:
     class_uri: valuesets:Fake
 metamodel_version: 1.7.0
 source_file: valuesets.yaml
-source_file_date: '2025-12-22T08:23:22'
+source_file_date: '2025-12-22T18:22:13'
 source_file_size: 3479
-generation_date: '2025-12-22T08:41:54'
+generation_date: '2026-01-28T07:53:41'
 
diff --git a/docs/slides/valuesets-slides.pdf b/docs/slides/valuesets-slides.pdf
diff --git a/docs/slides/valuesets-slides.pptx b/docs/slides/valuesets-slides.pptx
diff --git a/src/valuesets/schema/bio/currency_chemicals.yaml b/src/valuesets/schema/bio/currency_chemicals.yaml
@@ -5,7 +5,6 @@ id: https://w3id.org/common-value-sets/currency_chemicals
 imports:
 - linkml:types
 prefixes:
-  CVS: https://w3id.org/common-value-sets/
   linkml: https://w3id.org/linkml/
   CHEBI: http://purl.obolibrary.org/obo/CHEBI_
   valuesets: https://w3id.org/valuesets/
diff --git a/src/valuesets/schema/bio/genomics.yaml b/src/valuesets/schema/bio/genomics.yaml
@@ -5,7 +5,6 @@ id: https://w3id.org/common-value-sets/genomics
 imports:
 - linkml:types
 prefixes:
-  CVS: https://w3id.org/common-value-sets/
   linkml: https://w3id.org/linkml/
   mixs: http://purl.obolibrary.org/obo/MIXS_
   valuesets: https://w3id.org/valuesets/
diff --git a/src/valuesets/schema/bio/plant_developmental_stages.yaml b/src/valuesets/schema/bio/plant_developmental_stages.yaml
@@ -5,7 +5,6 @@ id: https://w3id.org/common-value-sets/plant_developmental_stages
 imports:
 - linkml:types
 prefixes:
-  CVS: https://w3id.org/common-value-sets/
   linkml: https://w3id.org/linkml/
   PO: http://purl.obolibrary.org/obo/PO_
   valuesets: https://w3id.org/valuesets/
diff --git a/src/valuesets/schema/bio/protein_evidence.yaml b/src/valuesets/schema/bio/protein_evidence.yaml
@@ -5,7 +5,6 @@ id: https://w3id.org/common-value-sets/protein_evidence
 imports:
 - linkml:types
 prefixes:
-  CVS: https://w3id.org/common-value-sets/
   linkml: https://w3id.org/linkml/
   valuesets: https://w3id.org/valuesets/
   orcid: https://orcid.org/
diff --git a/src/valuesets/schema/bio/proteomics_standards.yaml b/src/valuesets/schema/bio/proteomics_standards.yaml
@@ -10,7 +10,6 @@ prefixes:
   MS: http://purl.obolibrary.org/obo/MS_
   PRIDE: http://purl.obolibrary.org/obo/PRIDE_
   UO: http://purl.obolibrary.org/obo/UO_
-  cvs: https://w3id.org/common-value-sets/
   valuesets: https://w3id.org/valuesets/
   orcid: https://orcid.org/
   valuesets_meta: https://w3id.org/valuesets/meta/
diff --git a/src/valuesets/schema/bio/uniprot_species.yaml b/src/valuesets/schema/bio/uniprot_species.yaml
@@ -5,7 +5,6 @@ id: https://w3id.org/common-value-sets/uniprot_species
 imports:
 - linkml:types
 prefixes:
-  CVS: https://w3id.org/common-value-sets/
   linkml: https://w3id.org/linkml/
   NCBITaxon: http://purl.obolibrary.org/obo/NCBITaxon_
   uniprot.proteome: http://purl.uniprot.org/proteomes/
diff --git a/src/valuesets/schema/chemistry/reaction_directionality.yaml b/src/valuesets/schema/chemistry/reaction_directionality.yaml
@@ -8,7 +8,6 @@ imports:
 prefixes:
   linkml: https://w3id.org/linkml/
   SBO: http://biomodels.net/SBO/
-  cvs: https://w3id.org/common-value-sets/
   valuesets: https://w3id.org/valuesets/
   orcid: https://orcid.org/
   valuesets_meta: https://w3id.org/valuesets/meta/
diff --git a/src/valuesets/schema/computing/mime_types.yaml b/src/valuesets/schema/computing/mime_types.yaml
@@ -7,7 +7,6 @@ imports:
 - linkml:types
 prefixes:
   linkml: https://w3id.org/linkml/
-  cvs: https://w3id.org/linkml/valuesets/
   iana: https://www.iana.org/assignments/media-types/
   valuesets: https://w3id.org/valuesets/
   orcid: https://orcid.org/
diff --git a/src/valuesets/schema/contributor.yaml b/src/valuesets/schema/contributor.yaml
@@ -5,7 +5,6 @@ id: https://w3id.org/common-value-sets/contributor
 imports:
 - linkml:types
 prefixes:
-  CVS: https://w3id.org/common-value-sets/
   linkml: https://w3id.org/linkml/
   NCIT: http://purl.obolibrary.org/obo/NCIT_
   DataCite: https://purl.org/datacite/
diff --git a/src/valuesets/schema/types.yaml b/src/valuesets/schema/types.yaml
@@ -6,7 +6,6 @@ imports:
 - linkml:types
 prefixes:
   linkml: https://w3id.org/linkml/
-  cvs: https://w3id.org/linkml/valuesets/
   valuesets: https://w3id.org/valuesets/
   orcid: https://orcid.org/
   valuesets_meta: https://w3id.org/valuesets/meta/
