Merge pull request #40 from linkml/additional-valuesets

Add new value sets and improve existing enums

Author: dragon-ai-agent

cache/chebi/terms.csv

@@ -223,4 +223,18 @@ CHEBI:37739,glycerophospholipid,2025-10-19T08:26:29.438101
 CHEBI:26739,sphingolipid,2025-10-19T08:26:29.438967
 CHEBI:35341,steroid,2025-10-19T08:26:29.439762
 CHEBI:24913,isoprenoid,2025-10-19T08:26:29.440626
-CHEBI:46662,mineral,2025-11-03T14:57:37.820608
+CHEBI:46662,mineral,2025-11-03T14:57:37.820608CHEBI:26188,polyketide,2025-12-14T23:20:36.447071
+CHEBI:35186,terpene,2025-12-14T23:20:36.448502
+CHEBI:18154,polysaccharide,2025-12-14T23:20:36.449560
+CHEBI:166975,soybean oil,2025-12-14T23:20:37.579037
+CHEBI:16236,ethanol,2025-12-14T23:20:37.579948
+CHEBI:28885,butan-1-ol,2025-12-14T23:20:37.586396
+CHEBI:28887,dimethyl ether,2025-12-14T23:20:37.586758
+CHEBI:33492,radon-222 atom,2025-12-14T23:20:37.644846
+CHEBI:80504,Radium-226,2025-12-14T23:20:37.645590
+CHEBI:80505,Radium-228,2025-12-14T23:20:37.645978
+CHEBI:196959,caesium-137,2025-12-14T23:20:37.646576
+CHEBI:29238,tritium atom,2025-12-14T23:20:37.648492
+CHEBI:36927,carbon-14 atom,2025-12-14T23:20:37.649036
+CHEBI:37340,polonium-210 atom,2025-12-14T23:20:37.649555
+CHEBI:26188,polyketide,2025-12-14T23:34:13.539907

cache/chmo/terms.csv

@@ -40,3 +40,13 @@ CHMO:0001472,spin coating,2025-10-19T12:01:56.208781
 CHMO:0001471,dip coating,2025-10-19T12:01:56.208968
 CHMO:0001341,molecular beam epitaxy,2025-10-19T12:01:56.209164
 CHMO:0001868,spin echo pulse sequence,2025-10-19T12:01:56.343815
+CHMO:0000175,time-resolved resonance Rayleigh scattering,2025-12-14T23:20:36.853761
+CHMO:0000184,small-angle neutron scattering,2025-12-14T23:20:36.854078
+CHMO:0000213,optical coherence-domain reflectometry,2025-12-14T23:20:36.854434
+CHMO:0001810,synchrotron,2025-12-14T23:20:36.858087
+CHMO:0001107,positive electrospray ionisation mass spectrometry,2025-12-14T23:20:36.858565
+CHMO:0002837,nanoparticle synthesis,2025-12-14T23:20:36.859023
+CHMO:0002171,phase atomic force micrograph,2025-12-14T23:20:36.859470
+CHMO:0002836,Stöber process,2025-12-14T23:20:36.859713
+CHMO:0001069,far-infrared magnetic resonance spectroscopy,2025-12-14T23:20:36.860134
+CHMO:0001501,gasification,2025-12-14T23:20:37.585587

cache/edam/terms.csv

@@ -60,3 +60,11 @@ EDAM:format_3981,TAR format,2025-10-31T09:14:52.382143
 EDAM:format_3989,GZIP format,2025-10-31T09:14:52.382723
 EDAM:format_3990,AVI,2025-10-31T09:14:52.383257
 EDAM:data_2968,Image,2025-10-31T09:14:52.384010
+EDAM:3842,,2025-12-14T23:20:36.860492
+EDAM:3591,,2025-12-14T23:20:36.861095
+EDAM:3590,,2025-12-14T23:20:36.861441
+EDAM:3906,,2025-12-14T23:20:36.861669
+EDAM:1476,,2025-12-14T23:20:36.861877
+EDAM:1477,,2025-12-14T23:20:36.862076
+EDAM:3816,,2025-12-14T23:20:36.862266
+EDAM:3874,,2025-12-14T23:20:36.862569

cache/envo/terms.csv

@@ -57,3 +57,33 @@ ENVO:00005767,manured soil,2025-11-25T07:59:01.136442
 ENVO:00002273,fluvisol,2025-11-25T07:59:01.136678
 ENVO:00000873,freshwater biome,2025-11-25T07:59:01.137110
 ENVO:00002030,aquatic biome,2025-11-25T08:16:30.607490
+ENVO:01000787,wildfire,2025-12-14T23:20:37.634631
+ENVO:01000791,forest fire,2025-12-14T23:20:37.635079
+ENVO:01001296,tropical storm,2025-12-14T23:20:37.635600
+ENVO:01001482,tornado,2025-12-14T23:20:37.636107
+ENVO:01000710,flood,2025-12-14T23:20:37.636477
+ENVO:01000712,riverine flood,2025-12-14T23:20:37.636683
+ENVO:01000711,coastal flood,2025-12-14T23:20:37.636883
+ENVO:01000713,flash flood,2025-12-14T23:20:37.637077
+ENVO:1000745,drought,2025-12-14T23:20:37.637481
+ENVO:01000903,blizzard,2025-12-14T23:20:37.637917
+ENVO:01001294,convective storm,2025-12-14T23:20:37.638115
+ENVO:01000714,storm surge,2025-12-14T23:20:37.638322
+ENVO:01001026,electromagnetic radiation,2025-12-15T09:06:39.332556
+ENVO:21001219,ionizing radiation,2025-12-15T09:06:39.333380
+ENVO:21001218,gamma-ray radiation,2025-12-15T09:06:39.333783
+ENVO:21001217,X-ray radiation,2025-12-15T09:06:39.334097
+ENVO:21001216,ultraviolet radiation,2025-12-15T09:06:39.334365
+ENVO:21001215,visible spectrum radiation,2025-12-15T09:06:39.334694
+ENVO:21001214,infrared radiation,2025-12-15T09:06:39.334982
+ENVO:21001212,microwave radiation,2025-12-15T09:06:39.335229
+ENVO:21001213,radio wave radiation,2025-12-15T09:06:39.335475
+ENVO:01001864,photosynthetically active radiation,2025-12-15T09:06:39.335880
+ENVO:01001861,shortwave radiation,2025-12-15T09:06:39.336310
+ENVO:01001857,outgoing longwave radiation,2025-12-15T09:06:39.336543
+ENVO:03500014,near-infrared radiation,2025-12-15T09:06:39.337058
+ENVO:03500013,mid-infrared radiation,2025-12-15T09:06:39.337390
+ENVO:03500015,far-infrared radiation,2025-12-15T09:06:39.337877
+ENVO:01001027,acoustic radiation,2025-12-15T09:06:39.338186
+ENVO:03500012,ultrasound radiation,2025-12-15T09:06:39.338459
+ENVO:01001566,infrasound,2025-12-15T09:06:39.339064

cache/go/terms.csv

@@ -46,3 +46,6 @@ GO:0008150,biological_process,2025-10-19T07:20:41.341696
 GO:0005575,cellular_component,2025-10-19T07:20:41.342186
 GO:0007127,meiosis I,2025-10-19T07:42:21.101984
 GO:0043065,positive regulation of apoptotic process,2025-10-19T07:42:21.110811
+GO:0032991,protein-containing complex,2025-12-14T23:20:36.849410
+GO:0043226,organelle,2025-12-14T23:20:36.850847
+GO:0006508,proteolysis,2025-12-14T23:20:36.870813

cache/hp/terms.csv

@@ -24,3 +24,19 @@ HP:0003584,Late onset,2025-10-19T07:20:45.390622
 HP:0012825,Mild,2025-10-19T07:20:50.622288
 HP:0012826,Moderate,2025-10-19T07:20:50.622619
 HP:0012828,Severe,2025-10-19T07:20:50.622889
+HP:0000006,Autosomal dominant inheritance,2025-12-14T23:20:37.162668
+HP:0000007,Autosomal recessive inheritance,2025-12-14T23:20:37.163091
+HP:0001417,X-linked inheritance,2025-12-14T23:20:37.163644
+HP:0001423,X-linked dominant inheritance,2025-12-14T23:20:37.165402
+HP:0001419,X-linked recessive inheritance,2025-12-14T23:20:37.165805
+HP:0001450,Y-linked inheritance,2025-12-14T23:20:37.166312
+HP:0001427,Mitochondrial inheritance,2025-12-14T23:20:37.166715
+HP:0034345,Mendelian inheritance,2025-12-14T23:20:37.167224
+HP:0001426,Non-Mendelian inheritance,2025-12-14T23:20:37.167456
+HP:0010984,Digenic inheritance,2025-12-14T23:20:37.168067
+HP:0010983,Oligogenic inheritance,2025-12-14T23:20:37.168283
+HP:0010982,Polygenic inheritance,2025-12-14T23:20:37.168480
+HP:0032113,Semidominant inheritance,2025-12-14T23:20:37.169244
+HP:0034339,Pseudoautosomal inheritance,2025-12-14T23:20:37.169578
+HP:0034340,Pseudoautosomal dominant inheritance,2025-12-14T23:20:37.169815
+HP:0034341,Pseudoautosomal recessive inheritance,2025-12-14T23:20:37.170032

cache/mi/terms.csv

@@ -69,3 +69,4 @@ MI:0318,nucleic acid,2025-10-19T08:27:58.628081
 MI:0621,author-confidence,2025-10-19T08:27:58.628346
 MI:0506,over expressed level,2025-10-19T08:27:58.628577
 MI:0788,knock out,2025-10-19T08:27:58.628800
+MI:2338,electron tomography,2025-12-14T23:20:36.853182

cache/ncit/terms.csv

@@ -215,3 +215,96 @@ NCIT:C12345,Test Label,2025-10-20T10:35:58.258441
 NCIT:C43377,Microplate,2025-10-29T20:43:07.410222
 NCIT:C128793,Microplate Well,2025-10-29T20:43:07.418438
 NCIT:C103215,Tetrahedral Molecular Geometry,2025-11-07T16:28:22.748298
+NCIT:C813,Messenger RNA,2025-12-14T23:20:36.848317
+NCIT:C16837,Membrane Protein,2025-12-14T23:20:36.850282
+NCIT:C12508,Cell,2025-12-14T23:20:36.851774
+NCIT:C12801,Tissue,2025-12-14T23:20:36.852626
+NCIT:C103211,Square Planar 1 Molecular Geometry,2025-12-14T23:20:36.863595
+NCIT:C103216,Octahedral 12 Molecular Geometry,2025-12-14T23:20:36.864051
+NCIT:C29776,Strontium Sr-90,2025-12-14T23:20:37.647267
+NCIT:C1639,Iodine I-131,2025-12-14T23:20:37.647796
+NCIT:C29774,Plutonium-239,2025-12-14T23:20:37.648085
+NCIT:C2916,Carcinoma,2025-12-14T23:20:37.936605
+NCIT:C2852,Adenocarcinoma,2025-12-14T23:20:37.964061
+NCIT:C2929,Squamous Cell Carcinoma,2025-12-14T23:20:37.965003
+NCIT:C2930,Transitional Cell Carcinoma,2025-12-14T23:20:37.965886
+NCIT:C3915,Small Cell Neuroendocrine Carcinoma,2025-12-14T23:20:37.966981
+NCIT:C9118,Sarcoma,2025-12-14T23:20:37.967852
+NCIT:C9145,Osteosarcoma,2025-12-14T23:20:37.968889
+NCIT:C2946,Chondrosarcoma,2025-12-14T23:20:37.969642
+NCIT:C3194,Liposarcoma,2025-12-14T23:20:37.970363
+NCIT:C3158,Leiomyosarcoma,2025-12-14T23:20:37.970945
+NCIT:C3359,Rhabdomyosarcoma,2025-12-14T23:20:37.972416
+NCIT:C3208,Lymphoma,2025-12-14T23:20:37.975383
+NCIT:C9357,Hodgkin Lymphoma,2025-12-14T23:20:37.976398
+NCIT:C3211,Non-Hodgkin Lymphoma,2025-12-14T23:20:37.977051
+NCIT:C8851,Diffuse Large B-Cell Lymphoma,2025-12-14T23:20:37.977832
+NCIT:C3161,Leukemia,2025-12-14T23:20:37.978383
+NCIT:C3167,Acute Lymphoblastic Leukemia,2025-12-14T23:20:37.978993
+NCIT:C3171,Acute Myeloid Leukemia,2025-12-14T23:20:37.979437
+NCIT:C3163,Chronic Lymphocytic Leukemia,2025-12-14T23:20:37.979816
+NCIT:C3174,"Chronic Myeloid Leukemia, BCR-ABL1 Positive",2025-12-14T23:20:37.980259
+NCIT:C3224,Melanoma,2025-12-14T23:20:37.980752
+NCIT:C3234,Mesothelioma,2025-12-14T23:20:37.981325
+NCIT:C3708,Germ Cell Tumor,2025-12-14T23:20:37.982000
+NCIT:C3677,Benign Neoplasm,2025-12-14T23:20:37.982570
+NCIT:C2917,Carcinoma In Situ,2025-12-14T23:20:37.982915
+NCIT:C6807,Benign External Ear Neoplasm,2025-12-14T23:20:37.990406
+NCIT:C3698,Choroid Plexus Papilloma,2025-12-14T23:20:37.991062
+NCIT:C6286,Childhood Cerebellar Astrocytoma,2025-12-14T23:20:37.991947
+NCIT:C121624,Agonal Respiration,2025-12-14T23:20:37.992695
+NCIT:C2998,Dyspnea,2025-12-14T23:20:37.993344
+NCIT:C3017,Ependymoma,2025-12-14T23:20:37.993942
+NCIT:C6927,Malignant Epithelioma,2025-12-14T23:20:37.994468
+NCIT:C129355,Chromothripsis,2025-12-14T23:20:37.995194
+NCIT:C129354,ZFTA/RELA Fusion Protein,2025-12-14T23:20:37.995524
+NCIT:C3222,Medulloblastoma,2025-12-14T23:20:37.995973
+NCIT:C6774,Recurrent Childhood Medulloblastoma,2025-12-14T23:20:37.996424
+NCIT:C3059,Glioma,2025-12-14T23:20:37.996978
+NCIT:C2907,Brain Neoplasm,2025-12-14T23:20:37.997568
+NCIT:C3138,Inflammatory Bowel Disease,2025-12-14T23:20:37.997972
+NCIT:C27134,Hematopoietic and Lymphoid Cell Neoplasm,2025-12-14T23:20:37.998528
+NCIT:C3270,Neuroblastoma,2025-12-14T23:20:37.999107
+NCIT:C4817,Ewing Sarcoma,2025-12-14T23:20:37.999750
+NCIT:C3399,Swelling,2025-12-14T23:20:38.000308
+NCIT:C3769,Endometrioid Adenocarcinoma,2025-12-14T23:20:38.000854
+NCIT:C7548,Malignant Kidney Neoplasm,2025-12-14T23:20:38.001508
+NCIT:C7541,Retinoblastoma,2025-12-14T23:20:38.001951
+NCIT:C3010,Endocrine Neoplasm,2025-12-14T23:20:38.002441
+NCIT:C9107,Childhood Solid Neoplasm,2025-12-14T23:20:38.004683
+NCIT:C7058,Melanocytic Neoplasm,2025-12-14T23:20:38.015168
+NCIT:C7927,Liver Carcinoma,2025-12-14T23:20:38.016161
+NCIT:C4882,Myoma,2025-12-14T23:20:38.016873
+NCIT:C9306,Soft Tissue Sarcoma,2025-12-14T23:20:38.017523
+NCIT:C3709,Epithelial Neoplasm,2025-12-14T23:20:38.018004
+NCIT:C3262,Neoplasm,2025-12-14T23:20:38.018579
+NCIT:C4345,Myeloproliferative Neoplasm,2025-12-14T23:20:38.019389
+NCIT:C3247,Myelodysplastic Syndrome,2025-12-14T23:20:38.019892
+NCIT:C8150,Ann Arbor Stage IV Adult Immunoblastic Lymphoma,2025-12-14T23:20:38.020564
+NCIT:C60781,Astrocytoma,2025-12-14T23:20:38.021312
+NCIT:C4969,Therapy-Related Malignant Neoplasm,2025-12-14T23:20:38.021989
+NCIT:C3267,Wilms Tumor,2025-12-14T23:20:38.022498
+NCIT:C9385,Renal Cell Carcinoma,2025-12-14T23:20:38.023096
+NCIT:C3728,Hepatoblastoma,2025-12-14T23:20:38.023771
+NCIT:C3099,Hepatocellular Carcinoma,2025-12-14T23:20:38.024284
+NCIT:C3043,Fibrosarcoma,2025-12-14T23:20:38.025091
+NCIT:C9087,Kaposi Sarcoma,2025-12-14T23:20:38.025821
+NCIT:C6545,Childhood Testicular Embryonal Carcinoma,2025-12-14T23:20:38.026698
+NCIT:C9325,Adrenal Cortical Carcinoma,2025-12-14T23:20:38.027456
+NCIT:C7510,Malignant Thyroid Gland Neoplasm,2025-12-14T23:20:38.028194
+NCIT:C3871,Nasopharyngeal Carcinoma,2025-12-14T23:20:38.028946
+NCIT:C3372,Skin Neoplasm,2025-12-14T23:20:38.029462
+NCIT:C133427,International Neuroblastoma Risk Group Staging System,2025-12-14T23:20:38.036469
+NCIT:C133428,INRG Stage L1,2025-12-14T23:20:38.036965
+NCIT:C133429,INRG Stage L2,2025-12-14T23:20:38.037367
+NCIT:C133430,INRG Stage M,2025-12-14T23:20:38.037748
+NCIT:C6639,Stage 2 Neuroblastoma,2025-12-14T23:20:38.038421
+NCIT:C6640,Stage 3 Neuroblastoma,2025-12-14T23:20:38.039013
+NCIT:C6641,Stage 4 Neuroblastoma,2025-12-14T23:20:38.039457
+NCIT:C6642,Malignant Mediastinal Soft Tissue Neoplasm,2025-12-14T23:20:38.040047
+NCIT:C6643,Mediastinal Schwannoma,2025-12-14T23:20:38.040554
+NCIT:C6644,Pleural Lipoma,2025-12-14T23:20:38.041113
+NCIT:C103236,Fetal Neurodevelopmental Disorder,2025-12-14T23:20:38.041632
+NCIT:C103237,Decant,2025-12-14T23:20:38.042003
+NCIT:C103238,Antecubital Fossa,2025-12-14T23:20:38.042387
+NCIT:C103239,Total Proctocolectomy,2025-12-14T23:20:38.042749

cache/ror/terms.csv

@@ -55,3 +55,5 @@ ROR:04h4z8k05,UNESCO,2025-10-31T16:48:03.458793
 ROR:00gtfax65,International Atomic Energy Agency,2025-10-31T16:48:03.640425
 ROR:011pjwf87,World Meteorological Organization,2025-10-31T16:48:03.836400
 ROR:015z29x25,United Nations Environment Programme,2025-10-31T16:48:04.024396
+ROR:02catss52,European Bioinformatics Institute,2025-12-14T23:20:38.605985
+ROR:02meqm098,National Center for Biotechnology Information,2025-12-14T23:20:38.792977