temporary revert from uv

Author: linogaliana

.pre-commit.yaml

@@ -0,0 +1,40 @@
+repos:
+
+-   repo: https://github.com/astral-sh/ruff-pre-commit
+    # Ruff version.
+    rev: v0.7.4
+    hooks:
+    # Run the linter.
+    -   id: ruff
+        name: lint with ruff
+        types_or: [ python, pyi, jupyter ]
+        args: [ --fix ]
+
+    -   id: ruff
+        name: sort imports with ruff
+        args: [--select, I, --fix]
+
+    # Run the formatter.
+    -   id: ruff-format
+        name: format with ruff
+        types_or: [ python, pyi, jupyter ]
+
+-   repo: https://github.com/kynan/nbstripout
+    rev: 0.7.1
+    hooks:
+    -   id: nbstripout
+
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.5.0
+    hooks:
+    -   id: trailing-whitespace
+    -   id: end-of-file-fixer
+    -   id: check-yaml
+    -   id: check-added-large-files
+
+-   repo: https://github.com/astral-sh/uv-pre-commit
+    # uv version.
+    rev: 0.5.24
+    hooks:
+      - id: uv-export
+

docker/Dockerfile

@@ -19,7 +19,7 @@ COPY requirements.sh .
 
 # Install graphviz
 RUN pip install uv &&\
-    uv pip install -r requirements.txt --system && \
+    pip install -r requirements.txt --system && \
     chmod +x requirements.sh && \
     ./requirements.sh
 

pyproject.toml

@@ -5,34 +5,198 @@ description = "Source code for Lino Galiana's Python for data science course"
 readme = "README.md"
 requires-python = ">=3.12"
 dependencies = [
+    "affine==2.4.0",
+    "aiobotocore==2.19.0",
+    "aiohappyeyeballs==2.4.4",
+    "aiohttp==3.11.11",
+    "aioitertools==0.12.0",
+    "aiosignal==1.3.2",
     "altair==5.4.1",
+    "annotated-types==0.7.0",
+    "anyio==4.8.0",
+    "appdirs==1.4.4",
+    "attrs==25.1.0",
+    "babel==2.16.0",
     "black==24.8.0",
+    "blis==0.7.11",
+    "boto3==1.36.3",
+    "botocore==1.36.3",
+    "brotli==1.1.0",
     "cartiflette",
+    "cartopy==0.24.1",
+    "catalogue==2.0.10",
+    "cattrs==24.1.2",
+    "certifi==2024.12.14",
+    "charset-normalizer==3.4.1",
+    "click==8.1.8",
+    "click-plugins==1.1.1",
+    "cligj==0.7.2",
+    "cloudpathlib==0.20.0",
+    "commonmark==0.9.1",
+    "confection==0.1.5",
     "contextily==1.6.2",
+    "contourpy==1.3.1",
+    "cycler==0.12.1",
+    "cymem==2.0.11",
+    "dataclasses-json==0.6.7",
+    "diskcache==5.6.3",
     "duckdb==0.10.1",
+    "et-xmlfile==2.0.0",
+    "fastexcel==0.11.6",
+    "fastjsonschema==2.21.1",
+    "fiona==1.10.1",
+    "fontawesomefree==6.6.0",
+    "fonttools==4.55.6",
+    "frozenlist==1.5.0",
+    "fsspec==2023.12.2",
+    "geographiclib==2.0",
+    "geopandas==1.0.1",
     "geoplot==0.5.1",
+    "geopy==2.4.1",
     "graphviz==0.20.3",
     "great-tables==0.12.0",
+    "greenlet==3.1.1",
+    "h11==0.14.0",
+    "htmltools==0.6.0",
+    "httpcore==1.0.7",
+    "httpx==0.28.1",
+    "httpx-sse==0.4.0",
+    "idna==3.10",
+    "imageio==2.37.0",
+    "importlib-metadata==8.6.1",
+    "importlib-resources==6.5.2",
+    "inflate64==1.0.1",
+    "jinja2==3.1.5",
+    "jmespath==1.0.1",
+    "joblib==1.4.2",
+    "jsonpatch==1.33",
+    "jsonpointer==3.0.0",
+    "jsonschema==4.23.0",
+    "jsonschema-specifications==2024.10.1",
     "jupyter-cache==1.0.0",
+    "jupyter-client==8.6.3",
+    "jupyter-core==5.7.2",
     "kaleido==0.2.1",
+    "kiwisolver==1.4.8",
+    "langchain==0.3.15",
     "langchain-community==0.3.9",
+    "langchain-core==0.3.31",
+    "langchain-text-splitters==0.3.5",
+    "langcodes==3.5.0",
+    "langsmith==0.1.147",
+    "language-data==1.3.0",
+    "lazy-loader==0.4",
     "loguru==0.7.3",
+    "lxml==5.3.0",
+    "mapclassify==2.8.1",
+    "marisa-trie==1.2.1",
+    "markdown-it-py==3.0.0",
+    "markupsafe==3.0.2",
+    "marshmallow==3.26.0",
+    "matplotlib==3.10.0",
+    "mdurl==0.1.2",
+    "mercantile==1.2.1",
+    "mizani==0.11.4",
+    "multidict==6.1.0",
+    "multivolumefile==0.2.3",
+    "murmurhash==1.0.12",
+    "mypy-extensions==1.0.0",
+    "narwhals==1.23.0",
     "nbclient==0.10.0",
     "nbformat==5.10.4",
+    "networkx==3.4.2",
+    "numpy==2.2.2",
+    "openpyxl==3.1.5",
+    "orjson==3.10.15",
+    "owslib==0.28.1",
+    "packaging==24.2",
+    "pandas==2.2.3",
+    "pathspec==0.12.1",
+    "patsy==1.0.1",
+    "pebble==5.1.0",
+    "pillow==11.1.0",
+    "platformdirs==4.3.6",
     "plotnine==0.13.6",
     "polars==1.8.2",
+    "preshed==3.0.9",
+    "propcache==0.2.1",
+    "psutil==6.1.1",
+    "py7zr==0.20.8",
     "pyarrow==17.0.0",
+    "pybcj==1.0.3",
+    "pycryptodomex==3.21.0",
+    "pydantic==2.10.6",
+    "pydantic-core==2.27.2",
+    "pydantic-settings==2.7.1",
+    "pygments==2.19.1",
     "pynsee==0.1.8",
+    "pyogrio==0.10.0",
+    "pyparsing==3.2.1",
+    "pyppmd==1.1.1",
+    "pyproj==3.7.0",
+    "pyshp==2.3.1",
+    "python-dateutil==2.9.0.post0",
     "python-dotenv==1.0.1",
+    "python-magic==0.4.27",
+    "pytz==2024.2",
     "pywaffle==1.1.1",
+    "pyyaml==6.0.2",
+    "pyzmq==26.2.0",
+    "pyzstd==0.16.2",
+    "rasterio==1.4.3",
+    "referencing==0.36.2",
+    "requests==2.32.3",
+    "requests-cache==1.2.1",
+    "requests-toolbelt==1.0.0",
+    "retrying==1.3.4",
+    "rich==13.9.4",
+    "rpds-py==0.22.3",
+    "s3fs==2023.12.2",
+    "s3transfer==0.11.2",
     "scikit-image==0.24.0",
+    "scikit-learn==1.6.1",
     "scipy==1.13.0",
+    "seaborn==0.13.2",
+    "setuptools==75.8.0",
+    "shapely==2.0.6",
+    "shellingham==1.5.4",
+    "six==1.17.0",
+    "smart-open==7.1.0",
+    "sniffio==1.3.1",
     "spacy==3.7.5",
+    "spacy-legacy==3.0.12",
+    "spacy-loggers==1.0.5",
+    "sqlalchemy==2.0.37",
+    "srsly==2.5.1",
+    "statsmodels==0.14.4",
+    "tabulate==0.9.0",
+    "tenacity==9.0.0",
+    "texttable==1.7.0",
+    "thinc==8.2.4",
+    "threadpoolctl==3.5.0",
+    "tifffile==2025.1.10",
+    "topojson==1.9",
+    "tornado==6.4.2",
+    "tqdm==4.67.1",
+    "traitlets==5.14.3",
+    "typer==0.15.1",
+    "typing-extensions==4.12.2",
+    "typing-inspect==0.9.0",
+    "tzdata==2025.1",
+    "unidecode==1.3.8",
+    "url-normalize==1.4.3",
+    "urllib3==1.26.20",
+    "wasabi==1.1.3",
+    "weasel==0.4.1",
     "webdriver-manager==4.0.2",
     "wordcloud==1.9.3",
+    "wrapt==1.17.2",
     "xlrd==2.0.1",
+    "xyzservices==2025.1.0",
+    "yarl==1.18.3",
     "yellowbrick==1.5",
+    "zipp==3.21.0",
 ]
 
 [tool.uv.sources]
-cartiflette = { git = "https://github.com/inseefrlab/cartiflette" }
+cartiflette = { git = "https://github.com/inseefrlab/cartiflette", rev = "f6b0c5d049bd6dcae7b437bd931957371da24278" }