sbh-mouse-rag/pyproject.toml at main · linum-uqam/sbh-mouse-rag · GitHub

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[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "sbh-mouse-rag"
version = "0.0.0"
requires-python = ">=3.10,<3.12"
dependencies = [
  "numpy>=1.26,<3",
  "scipy",
  "pandas",
  "tqdm",
  "pillow",
  "requests",
  "pyyaml",
  "python-dotenv",
  "opencv-python",
  "torch",
  "torchvision",
  "torchaudio",
  "transformers==4.56.0",
  "tokenizers",
  "accelerate",
  "sentence-transformers",
  "huggingface-hub",
  "safetensors",
  "timm",
  "faiss-cpu",
  "scikit-image",
  "imageio",
  "tifffile",
  "scikit-learn",
  "google-cloud-storage"
]

[project.optional-dependencies]
allen = [
  "numpy<1.24",
  "allensdk>=2.16",
  "simpleitk",
  "nibabel",
  "monai"
]

api = [
  "fastapi",
  "uvicorn[standard]",
  "pydantic",
  "pydantic-settings",
  "SQLAlchemy",
  "psycopg2-binary"
]

research = [
  "mlflow",
  "optuna"
]

full = [
  "allensdk>=2.16",
  "simpleitk",
  "nibabel",
  "monai",
  "fastapi",
  "uvicorn[standard]",
  "pydantic",
  "pydantic-settings",
  "SQLAlchemy",
  "psycopg2-binary",
  "mlflow",
  "optuna"
]

[tool.setuptools]
include-package-data = true

[tool.setuptools.packages.find]
where = ["."]
include = ["index*", "volume*"]

[tool.uv]
python-preference = "managed"