[BUG] `command not found: poetry` with mod `code-server-python3-poetry`

[jo-chemla]

Is there an existing issue for this?

• I have searched the existing issues

Name of mod

code-server-python3-poetry

Name of base container

lscr.io/linuxserver/code-server

Current Behavior

I tried the recent #958 code-server-python3-poetry dockermod by @howardt12345 but it seems that poetry is not installed in my setup, since running the following command either in container or code-server console returns:
command not found: poetry

Running python3 does succeed.

I also tried restarting the container or re-running compose multiple times, but poetry is never found in path. The whole logs are in the dedicated section, below is the section regarding poetry.

**** Setting up poetry ****
Retrieving Poetry metadata
The latest version (1.8.4) is already installed.
**** ensuring poetry is in PATH ****
**** poetry setup complete ****

Expected Behavior

According to #959 running poetry --version should succeed in returning poetry version number

Steps To Reproduce

1. Run the following docker-compose hub
2. Go to container console or code-server console
3. run poetry --version
4. returns command not found: poetry.

Environment

- OS: QNAP QTS
- How docker service was installed: via qnap ContainerStation, and docker-compose files are run via portainer.

CPU architecture

x86-64

Docker creation

Here is the docker-compose file: 



version: "3.5"
services:
  code-server:
    image: lscr.io/linuxserver/code-server:latest 
    container_name: code-server
    environment:
      - DEFAULT_WORKSPACE=/workspace
      - DOCKER_MODS=linuxserver/mods:code-server-python3-poetry|linuxserver/mods:universal-docker|linuxserver/mods:code-server-pnpm|linuxserver/mods:code-server-nodejs|linuxserver/mods:code-server-zsh|linuxserver/mods:code-server-nvm
    volumes:
      - /workspace/:/workspace
      - /config/frontends/vscode-server:/config

Container logs

Full logs

The latest version (1.8.4) is already installed.

**** ensuring poetry is in PATH ****

**** poetry setup complete ****

[custom-init] No custom files found, skipping...

[mod-init] Running Docker Modification Logic

[mod-init] Adding linuxserver/mods:code-server-python3-poetry to container

[mod-init] linuxserver/mods:code-server-python3-poetry at sha256:c5c9cfc568722e3d9ad3aa5e337be7d338c5bd9bf35c5edd8b38a714c50462e0 has been previously applied skipping

[mod-init] Adding linuxserver/mods:universal-docker to container

[mod-init] linuxserver/mods:universal-docker at sha256:a9eb9c49cab4673e5b9bd56656c105eaa176fa06739c2239857a324f0c0deafc has been previously applied skipping

[mod-init] Adding linuxserver/mods:code-server-pnpm to container

[mod-init] linuxserver/mods:code-server-pnpm at sha256:8cba0c5fc8bec29efb313a7b6e46344c129fa03e33e0efcd4ce33e78e634f696 has been previously applied skipping

[mod-init] Adding linuxserver/mods:code-server-nodejs to container

[mod-init] linuxserver/mods:code-server-nodejs at sha256:ef89f02941b6d5e689adc42aab4db179b7178321fb6ded4ef3551273bb542579 has been previously applied skipping

[mod-init] Adding linuxserver/mods:code-server-zsh to container

[mod-init] linuxserver/mods:code-server-zsh at sha256:58692eb8b8c3321567196fd9f6e006cbffdfb8806fbe3679e3d44bdea5d19f9b has been previously applied skipping

[mod-init] Adding linuxserver/mods:code-server-nvm to container

[mod-init] linuxserver/mods:code-server-nvm at sha256:fe5f0bccdf91b275d401c619576a7635500917c4bf17564916f10d1107e13682 has been previously applied skipping

[migrations] started

[migrations] no migrations found

usermod: no changes

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   Brought to you by linuxserver.io

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GID/UID

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User UID:    1000

User GID:    100

───────────────────────────────────────

Linuxserver.io version: 4.95.2-ls241

Build-date: 2024-11-12T17:43:39+00:00

───────────────────────────────────────

    

**** installing docker and docker compose ****

**** installing pnpm  ****

**** docker and docker-compose already installed, skipping ****

**** Please map /var/run/docker.sock for access to docker service on host. Alternatively you can manually define a remote host address with the docker cli option -H ****

**** zsh already installed, skipping ****

**** Oh My Zsh is already installed. You can update it via "omz update" in terminal. ****

**** python3 already installed ****

**** installing nodejs dev environment ****

**** Adding nodejs and yarn to package install list ****

[pkg-install-init] **** Installing all mod packages ****

Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease

Hit:2 http://archive.ubuntu.com/ubuntu noble-updates InRelease

Hit:3 http://archive.ubuntu.com/ubuntu noble-security InRelease

Hit:4 https://dl.yarnpkg.com/debian stable InRelease

Hit:5 https://deb.nodesource.com/node_16.x nodistro InRelease

==> Downloading pnpm binaries 9.12.3

Reading package lists... WARN  using --force I sure hope you know what you are doing

Copying pnpm CLI from /tmp/tmp.vwj3fltls9/pnpm to /config/.local/share/pnpm/pnpm

No changes to the environment were made. Everything is already up to date.

Reading package lists...

Building dependency tree...

Reading state information...

nodejs is already the newest version (18.19.1+dfsg-6ubuntu5).

yarn is already the newest version (1.22.22-1).

0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

**** installing nvm ****

**** nvm already installed, skipping ****

**** Setting up poetry ****

Retrieving Poetry metadata

The latest version (1.8.4) is already installed.

**** ensuring poetry is in PATH ****

**** poetry setup complete ****

[custom-init] No custom files found, skipping...

[2024-11-13T09:28:56.279Z] info  code-server 4.95.2 fc97e248c354be27a054c182669a6984dd73cd41

[2024-11-13T09:28:56.366Z] info  Using user-data-dir /config/data

[2024-11-13T09:28:56.396Z] info  Using config file /config/.config/code-server/config.yaml

[2024-11-13T09:28:56.397Z] info  HTTP server listening on http://0.0.0.0:8443/

[2024-11-13T09:28:56.397Z] info    - Authentication is enabled

[2024-11-13T09:28:56.397Z] info      - Using password from $PASSWORD

[2024-11-13T09:28:56.397Z] info    - Not serving HTTPS

[2024-11-13T09:28:56.397Z] info  Session server listening on /config/data/code-server-ipc.sock

Connection to 127.0.0.1 8443 port [tcp/*] succeeded!

[ls.io-init] done.

[10:29:04] 

[10:29:04] Extension host agent started.

[10:29:13] [100.74.185.82][af0ae598][ExtensionHostConnection] Unknown reconnection token (never seen).

[10:29:31] [100.74.185.82][587545ff][ManagementConnection] Unknown reconnection token (never seen).

File not found: /app/code-server/lib/vscode/node_modules/vsda/rust/web/vsda.js

File not found: /app/code-server/lib/vscode/node_modules/vsda/rust/web/vsda_bg.wasm

[10:29:51] [100.74.185.82][78e9e170][ManagementConnection] New connection established.

[10:29:54] [100.74.185.82][69df0480][ExtensionHostConnection] New connection established.

[10:29:55] [100.74.185.82][69df0480][ExtensionHostConnection] <1616> Launched Extension Host Process.

[jo-chemla]

It seems that only the alias is missing, since running $HOME/.local/bin/poetry --version does succeed from both container console and code-server console.

With the selection of mods I've used, here are - from the container cmd - the PATH variable from the container cmd and /var/run/s6/container_environment/PATH contents:

# DOCKER_MODS=linuxserver/mods:code-server-python3-poetry|linuxserver/mods:universal-docker|
# linuxserver/mods:code-server-pnpm|linuxserver/mods:code-server-nodejs|linuxserver/mods:code-server-zsh|
# linuxserver/mods:code-server-nvm

# tested echo $PATH && printenv PATH && env | /bin/grep PATH
> echo $PATH
/config/.nvm/versions/node/v23.2.0/bin:/config/.local/share/pnpm:/lsiopy/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

> cat /var/run/s6/container_environment/PATH
/command:/lsiopy/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:$HOME/.local/binroot

# Note zsh, nodejs have been added directly to /usr/bin/ so only poetry is missing

What's weird is that from code-server terminal poetry should be accessible since $HOME/.local/bin is part of $PATH, but yet poetry command is not found unless called via absolute path

> $ echo $PATH
/app/code-server/lib/vscode/bin/remote-cli:/config/.nvm/versions/node/v23.2.0/bin:/config/.local/share/pnpm:
/command:/lsiopy/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:$HOME/.local/bin
> $ ls $HOME/.local/bin
poetry
> $ $HOME/.local/bin/poetry --version
Poetry (version 1.8.4)
> $ poetry --version
bash: poetry: command not found

Looking at the PR and how path is handled below, it seems that this is done differently in poetry than eg

https://github.com/howardt12345/docker-mods/blob/955bd728dfe474af83de78c22967063403a927b8/root/etc/s6-overlay/s6-rc.d/init-mod-code-server-python3-poetry-install/run#L11

See alternatives way to set path

• here in npmglobal sed -i '1s|^|/config/npm-global/bin:|' /var/run/s6/container_environment/PATH
  

  docker-mods/root/etc/s6-overlay/s6-rc.d/init-mod-code-server-npmglobal-install/run

  Lines 12 to 13 in 7fe71cc

  	if ! grep -q '/config/npm-global/bin' /var/run/s6/container_environment/PATH; then
  	sed -i '1s|^|/config/npm-global/bin:|' /var/run/s6/container_environment/PATH

• and here in julia symlinking to /usr/local/bin/poetry
  

  docker-mods/root/etc/s6-overlay/s6-rc.d/init-mod-code-server-julia-install/run

  Line 29 in cfc9799

  ln -s /julia/bin/julia /usr/local/bin/julia

The issue might however come from another docker-mod that erases poetry but not the other due to the order of the modules being loaded - will try to pinpoint which one with more testing.

[LinuxServer-CI]

This issue has been automatically marked as stale because it has not had recent activity. This might be due to missing feedback from OP. It will be closed if no further activity occurs. Thank you for your contributions.

[jo-chemla]

Hi there, the issue is still present, please don't mark it as stale. Hope to find a fix!

[howardt12345]

@jo-chemla Hi! Apologies for not getting back to you, I have not been able to replicate this error...

Here's the docker compose I have for you to compare:

version: "3.8"
services:
  code-server:
    image: lscr.io/linuxserver/code-server:latest
    container_name: code-server
    environment:
      - DEFAULT_WORKSPACE=/config/workspace
      - DOCKER_MODS=linuxserver/mods:universal-git|linuxserver/mods:code-server-nodejs|linuxserver/mods:code-server-nvm|linuxserver/mods:code-server-npmglobal|linuxserver/mods:code-server-python3-poetry
      - HOME=/config
    volumes:
      - ./projects:/config/workspace
      - ./code-server:/config
    ports:
      - 8443:8443
    restart: unless-stopped

@aptalca what are your thoughts on setting the path for poetry?

[jo-chemla]

Thanks for getting back. I dug a bit more into the logs, and indeed poetry is now installed and available via /workspace/.local/bin/poetry as explicitly stated in the below logs.

It might indeed be useful that the code-server-python3-poetry docker-mod set the path for poetry - I wrongly assumed because of the **** ensuring poetry is in PATH **** line that it should be available via the alias.

Poetry (1.8.5) is installed now. Great!
To get started you need Poetry's bin directory (/workspace/.local/bin) in your `PATH` environment variable.
Add `export PATH="/workspace/.local/bin:$PATH"` to your shell configuration file.
Alternatively, you can call Poetry explicitly with `/workspace/.local/bin/poetry`.
You can test that everything is set up by executing: `poetry --version`
**** ensuring poetry is in PATH ****
**** poetry setup complete ****

[jo-chemla]

Thanks for the PR #989 ! I just did another try at pulling the code-server image and spinning up the container, using the poetry docker-mod, but still face the error bash: poetry: command not found.

Probably once the PR commits gets merged into the mod branch, one need to wait for a new release of the mod? From the docker-hub registry of linuxserver/mods, a new release followed the merged PR here yet it seems either I'm not fetching it or the fix won't make poetry available in PATH. Thanks again for your help!

EDIT:
First I tried enforcing the docker-mod version fecthed by using linuxserver/mods:code-server-python3-poetry-28ffd6403506037427f7e19210c669820abeb980 docker-mod string, then I finally realized that the poetry command is not available in bash, but is indeed available within vscode terminal. So everything is working as expected, even for the mod without commit hash. Thanks again for the fix!