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1 parent 7f6be3a commit 5b0ce16Copy full SHA for 5b0ce16
modules/preprocess/preprocess_individual.snakefile
@@ -94,7 +94,7 @@ rule star_align:
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conda:
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"../envs/star_env.yml"
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shell:
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- "STAR --runThreadN {threads} --genomeDir {config[star_index]} "
+ "STAR --runThreadN 8 --genomeDir {config[star_index]} "
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"--outReadsUnmapped None "
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"--chimSegmentMin 12 "
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"--chimJunctionOverhangMin 12 "
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