Merge pull request #1296 from LLNL/v0.9.0-rc

v0.9.0 release candidate

Author: white238

.gitlab-ci.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2017-2023, Lawrence Livermore National Security, LLC and
+# Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC and
 # other Axom Project Developers. See the top-level LICENSE file for details.
 #
 # SPDX-License-Identifier: (BSD-3-Clause)
@@ -36,6 +36,7 @@ stages:
     - ${ALLOC_COMMAND} ${ASSIGN_ID} python3 scripts/llnl_scripts/build_src.py -v --host-config ${HOST_CONFIG} --extra-cmake-options '-DENABLE_DOCS=OFF ${EXTRA_CMAKE_OPTIONS}' --build-type ${BUILD_TYPE:-Debug} ${EXTRA_OPTIONS}
     - echo -e "\e[0Ksection_end:$(date +%s):src_build_and_test\r\e[0K"
   artifacts:
+    expire_in: 2 weeks
     paths:
       - _axom_build_and_test_*/output.log*.txt
       - _axom_build_and_test_*/build-*/output.log*.txt
@@ -48,6 +49,7 @@ stages:
     - ${ALLOC_COMMAND} python3 scripts/llnl_scripts/build_tpls.py -v --spec="${SPEC} ${EXTRA_SPEC}" --directory=${FULL_BUILD_ROOT}
     - echo -e "\e[0Ksection_end:$(date +%s):full_build_and_test\r\e[0K"
   artifacts:
+    expire_in: 2 weeks
     paths:
       - ${FULL_BUILD_ROOT}/${SYS_TYPE}/*/_axom_build_and_test_*/output.log*.txt
       - ${FULL_BUILD_ROOT}/${SYS_TYPE}/*/_axom_build_and_test_*/build-*/output.log*.txt

.gitlab/build_lassen.yml

@@ -1,12 +1,11 @@
-# Copyright (c) 2017-2023, Lawrence Livermore National Security, LLC and
+# Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC and
 # other Axom Project Developers. See the top-level LICENSE file for details.
 #
 # SPDX-License-Identifier: (BSD-3-Clause)
 
 ####
 # This is the share configuration of jobs for lassen
 .on_lassen:
-  variables:
   tags:
     - shell
     - lassen
@@ -23,14 +22,14 @@
 .src_build_on_lassen:
   stage: build
   variables:
-    ALLOC_COMMAND: "lalloc 1 -W 25 -q pdebug -alloc_flags atsdisable"
+    ALLOC_COMMAND: "lalloc 1 -W 25 -q pci -alloc_flags atsdisable"
   extends: [.src_build_script, .on_lassen, .src_workflow]
   needs: []
 
 .full_build_on_lassen:
   stage: build
   variables:
-    ALLOC_COMMAND: "lalloc 1 -W 45 -q pdebug -alloc_flags atsdisable"
+    ALLOC_COMMAND: "lalloc 1 -W 45 -q pci -alloc_flags atsdisable"
   extends: [.full_build_script, .on_lassen, .full_workflow]
   needs: []
 

.gitlab/build_quartz.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2017-2023, Lawrence Livermore National Security, LLC and
+# Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC and
 # other Axom Project Developers. See the top-level LICENSE file for details.
 #
 # SPDX-License-Identifier: (BSD-3-Clause)
@@ -10,7 +10,7 @@
     - shell
     - quartz
   rules:
-    - if: '$CI_COMMIT_BRANCH =~ /_qnone/ || $ON_RUBY == "OFF"' #run except if ...
+    - if: '$CI_COMMIT_BRANCH =~ /_qnone/ || $ON_QUARTZ == "OFF"' #run except if ...
       when: never
     - if: '$CI_JOB_NAME =~ /quartz_release/'
       when: always
@@ -26,9 +26,7 @@ quartz_allocate:
   extends: [.on_quartz, .src_workflow]
   stage: allocate
   script:
-    # Use when ellastic ci is on quartz or we go back to ruby
-    #- salloc --reservation=ci --qos=ci_ruby -N 1 -c 36 -t 60 --no-shell --job-name=${PROJECT_ALLOC_NAME}
-    - salloc -N 1 -c 36 -t 60 -p pdebug --no-shell --job-name=${PROJECT_ALLOC_NAME}
+    - salloc -N 1 -c 36 -t 60 --res=ci --no-shell --job-name=${PROJECT_ALLOC_NAME}
   needs: []
 
 ####
@@ -48,17 +46,13 @@ quartz_release:
 .src_build_on_quartz:
   stage: build
   variables:
-    # Use when ellastic ci is on quartz or we go back to ruby
-    # ALLOC_COMMAND: "srun --reservation=ci --qos=ci_ruby -t 60 -N 1 "
     ALLOC_COMMAND: "srun -t 60 -N 1 -p pdebug"
   extends: [.src_build_script, .on_quartz, .src_workflow]
   needs: [quartz_allocate]
 
 .full_build_on_quartz:
   stage: build
   variables:
-    # Use when ellastic ci is on quartz or we go back to ruby
-    # ALLOC_COMMAND: "srun --reservation=ci --qos=ci_ruby -t 60 -N 1 "
     ALLOC_COMMAND: "srun -t 60 -N 1 -p pdebug"
   extends: [.full_build_script, .on_quartz, .full_workflow]
   needs: []

.gitlab/build_rzansel.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2017-2023, Lawrence Livermore National Security, LLC and
+# Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC and
 # other Axom Project Developers. See the top-level LICENSE file for details.
 #
 # SPDX-License-Identifier: (BSD-3-Clause)
@@ -12,7 +12,7 @@
     - rzansel
   before_script:
     - module load cuda/11.2.0
-    - module load cmake/3.18.0
+    - module load cmake/3.21.1
 
 ####
 # Template

.gitlab/build_rzgenie.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2017-2023, Lawrence Livermore National Security, LLC and
+# Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC and
 # other Axom Project Developers. See the top-level LICENSE file for details.
 #
 # SPDX-License-Identifier: (BSD-3-Clause)

.gitlab/build_tioga.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2017-2023, Lawrence Livermore National Security, LLC and
+# Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC and
 # other Axom Project Developers. See the top-level LICENSE file for details.
 #
 # SPDX-License-Identifier: (BSD-3-Clause)
@@ -21,14 +21,14 @@
 .src_build_on_tioga:
   stage: build
   variables:
-    ALLOC_COMMAND: "flux mini run --exclusive --time-limit=30m --nodes=1"
+    ALLOC_COMMAND: "flux run --queue pci --exclusive --time-limit=30m --nodes=1"
   extends: [.src_build_script, .on_tioga, .src_workflow]
   needs: []
 
 .full_build_on_tioga:
   stage: build
   variables:
-    ALLOC_COMMAND: "flux mini run --exclusive --time-limit=60m --nodes=1"
+    ALLOC_COMMAND: "flux run --queue pci --exclusive --time-limit=60m --nodes=1"
   extends: [.full_build_script, .on_tioga, .full_workflow]
   needs: []
 
@@ -39,14 +39,6 @@ tioga-clang_16_0_0_hip_5_6_0-src:
     COMPILER: "clang@16.0.0_hip"
     HOST_CONFIG: "tioga-toss_4_x86_64_ib_cray-${COMPILER}.cmake"
   extends: .src_build_on_tioga
-  allow_failure: true
-
-tioga-cce_15_0_1_hip_5_4_3-src:
-  variables:
-    COMPILER: "cce@15.0.1_hip"
-    HOST_CONFIG: "tioga-toss_4_x86_64_ib_cray-${COMPILER}.cmake"
-  extends: .src_build_on_tioga
-  allow_failure: true
 
 ####
 # Full Build jobs
@@ -56,12 +48,3 @@ tioga-clang_16_0_0_hip_5_6_0-full:
     SPEC: "%${COMPILER}~openmp+rocm+mfem+c2c"
     EXTRASPEC: "amdgpu_target=gfx90a ^hip@5.6.0 ^hsa-rocr-dev@5.6.0 ^llvm-amdgpu@5.6.0 ^raja~openmp+rocm ^umpire~openmp+rocm ^hdf5 cflags=-Wno-int-conversion"
   extends: .full_build_on_tioga
-  allow_failure: true
-
-tioga-cce_15_0_1_hip_5_4_3-full:
-  variables:
-    COMPILER: "cce@15.0.1_hip"
-    SPEC: "%${COMPILER}~openmp+rocm+mfem+c2c"
-    EXTRASPEC: "amdgpu_target=gfx90a ^hip@5.4.3 ^hsa-rocr-dev@5.4.3 ^llvm-amdgpu@5.4.3 ^raja~openmp+rocm ^umpire~openmp+rocm ^hdf5 cflags=-Wno-int-conversion"
-  extends: .full_build_on_tioga
-  allow_failure: true

.mailmap

@@ -2,6 +2,7 @@ Aaron Black <black27@llnl.gov>                  Aaron C. Black <black27@llnl.gov
 Adam J. Kunen <kunen1@llnl.gov>                 Adam J. Kunen <kunen1@sierra1626.llnl.gov>
 Adrien M. Bernede <bernede1@llnl.gov>           Adrien Bernede <51493078+adrienbernede@users.noreply.github.com>
 Aesha Parekh <aeshabparekh@gmail.com>           Aesha Parekh <29237123+aeshapar@users.noreply.github.com>
+Alan Dayton <dayton8@llnl.gov>                  Alan Dayton <6393677+adayton1@users.noreply.github.com>
 Arlie Capps <capps2@llnl.gov>                   Arlie Capps <capps2@cab669.llnl.gov>
 Arlie Capps <capps2@llnl.gov>                   Arlie Capps <capps2@cab689.llnl.gov>
 Arlie Capps <capps2@llnl.gov>                   Arlie Capps <48997041+agcapps@users.noreply.github.com>
@@ -13,6 +14,7 @@ Benjamin Curtice Corbett <corbett5@llnl.gov>    Benjamin Curtice Corbett <corbet
 Benjamin Curtice Corbett <corbett5@llnl.gov>    Ben Corbett <corbett5@llnl.gov>
 Benjamin Curtice Corbett <corbett5@llnl.gov>    Benjamin Corbett <corbett5@llnl.gov>
 Benjamin Curtice Corbett <corbett5@llnl.gov>    Ben Corbett <32752943+corbett5@users.noreply.github.com>
+Brad J. Whitlock <whitlock2@llnl.gov>           Brad Whitlock <whitlock2@llnl.gov>
 Brian Manh Hien Han <han12@llnl.gov>            Brian Han <han12@llnl.gov>          
 Brian Manh Hien Han <han12@llnl.gov>            Brian Manh Hien Han <han12@rzansel19.coral.llnl.gov>
 Brian T.N. Gunney <gunney1@llnl.gov>            Brian Gunney <45609916+gunney1@users.noreply.github.com>
@@ -24,7 +26,10 @@ Daniel Taller <taller1@llnl.gov>                Danny Taller <66029857+dtaller@u
 Esteban Pauli <pauli2@llnl.gov>                 Esteban Pauli <40901502+estebanpauli@users.noreply.github.com>
 Evan Taylor Desantola <desantola1@llnl.gov>     Evan Taylor DeSantola <desantola1@llnl.gov>
 George Zagaris <zagaris2@llnl.gov>              George Zagaris <george.zagaris@gmail.com>
-Jacob Spainhour <spainhour1@llnl.gov>           jcs15c <Jacob.Spainhour@colorado.edu>
+Jacob Spainhour <Jacob.Spainhour@colorado.edu>  jcs15c <Jacob.Spainhour@colorado.edu>
+Jacob Spainhour <Jacob.Spainhour@colorado.edu>  Jacob Spainhour <jcs15c@my.fsu.edu>
+Jacob Spainhour <Jacob.Spainhour@colorado.edu>  Jacob Spainhour <spainhour1@llnl.gov>
+Jamie A. Bramwell <bramwell1@llnl.gov>          Jamie Bramwell <bramwell1@llnl.gov>
 Joe Hennis <hennis1@llnl.gov>                   Hennis <hennis1@luz.llnl.gov>
 Joe Hennis <hennis1@llnl.gov>                   hennis1 <73615573+hennis1@users.noreply.github.com>
 Josh Essman <essman1@llnl.gov>                  Josh Essman <68349992+joshessman-llnl@users.noreply.github.com>
@@ -59,7 +64,6 @@ Robert Carson <rac428@cornell.edu>              Robert <rac428@cornell.edu>
 Robert Carson <rac428@cornell.edu>              rcarson3 <rac428@cornell.edu>
 Robert Cohn <robert.s.cohn@intel.com>           rscohn2 <rscohn2@gmail.com>
 Samuel P. Mish <mish2@llnl.gov>                 samuelpmishLLNL <61714427+samuelpmishLLNL@users.noreply.github.com>
-Brad J. Whitlock <whitlock2@llnl.gov>           Brad Whitlock <whitlock2@llnl.gov>
 
 Axom Shared User <axom-dev@llnl.gov>            Asctoolkit Shared User <axom-dev@llnl.gov>
 Axom Shared User <axom-dev@llnl.gov>            Asctoolkit Shared User <atk@cab687.llnl.gov>

.readthedocs.yml

@@ -10,6 +10,10 @@ build:
   os: ubuntu-22.04
   tools:
     python: "3.11"
+  apt_packages:
+    - ghostscript
+    - graphviz
+    - texlive-full
 
 # Build documentation in the docs/ directory with Sphinx
 sphinx:

.uberenv_config.json

@@ -4,12 +4,12 @@
 "package_final_phase": "initconfig",
 "package_source_dir": "../..",
 "spack_url": "https://github.com/spack/spack.git",
-"spack_commit": "44f0708af424cb12dd05dd761de1cdae986ea5cf",
+"spack_commit": "0d92b07dbd30b41bc6f50a61f26bc0056dca5e44",
 "spack_configs_path": "scripts/spack/configs",
 "spack_packages_path": ["scripts/spack/radiuss-spack-configs/packages", "scripts/spack/packages"],
 "spack_concretizer": "clingo",
 "vcpkg_url": "https://github.com/microsoft/vcpkg",
-"vcpkg_commit": "6f7ffeb18f99796233b958aaaf14ec7bd4fb64b2",
+"vcpkg_commit": "c8696863d371ab7f46e213d8f5ca923c4aef2a00",
 "vcpkg_triplet": "x64-windows",
 "vcpkg_ports_path": "scripts/vcpkg_ports"
 }

LICENSE

@@ -1,4 +1,4 @@
-Copyright (c) 2017-2023, Lawrence Livermore National Security, LLC.
+Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC.
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without