llnl
diff --git a/‎.git-blame-ignore-revs‎
Lines changed: 1 addition & 1 deletion b/‎.git-blame-ignore-revs‎
Lines changed: 1 addition & 1 deletion
diff --git a/‎.github/actions/apply-style/checkout.sh‎
Lines changed: 45 additions & 0 deletions b/‎.github/actions/apply-style/checkout.sh‎
Lines changed: 45 additions & 0 deletions
diff --git a/‎.github/workflows/check-format.yml‎
Lines changed: 50 additions & 0 deletions b/‎.github/workflows/check-format.yml‎
Lines changed: 50 additions & 0 deletions
diff --git a/‎.github/workflows/check-spelling.yml‎
Lines changed: 50 additions & 0 deletions b/‎.github/workflows/check-spelling.yml‎
Lines changed: 50 additions & 0 deletions
diff --git a/‎.github/workflows/check-swig.yml‎
Lines changed: 49 additions & 0 deletions b/‎.github/workflows/check-swig.yml‎
Lines changed: 49 additions & 0 deletions
diff --git a/‎.github/workflows/pysundials-wheels.yml‎
Lines changed: 79 additions & 0 deletions b/‎.github/workflows/pysundials-wheels.yml‎
Lines changed: 79 additions & 0 deletions
diff --git a/‎.gitignore‎
Lines changed: 5 additions & 0 deletions b/‎.gitignore‎
Lines changed: 5 additions & 0 deletions
diff --git a/‎CMakeLists.txt‎
Lines changed: 4 additions & 0 deletions b/‎CMakeLists.txt‎
Lines changed: 4 additions & 0 deletions
@@ -9,4 +9,4 @@ b578eabccd77b7642b04ddda9d8530f05890d1b4
 # Apply formatting to CMake files
 c6b9a02f24a27081c471d63dfc524684a9f5a9e3
 # Update formatting for Python files
-63f06adc12db0edc250fe9d86ce4ffbbc272a489
+b166f03e29852a17fec5747cb64c4c986f24d42b
@@ -0,0 +1,45 @@
+#!/bin/bash
+
+###
+# Attempt to find the branch of the PR from the detached head state
+##
+
+echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
+echo "Attempting to find branch that matches commit..."
+
+# Get the current commit SHA
+current_commit_sha=$(git rev-parse HEAD)
+# List all branches containing the current commit SHA
+branches=$(git branch -r --contains $current_commit_sha)
+
+echo "all branches:"
+echo "$(git branch -a)"
+echo "branches with SHA $current_commit_sha:"
+echo "$branches"
+
+# Loop over the string split by whitespace
+branch=""
+num_branches_found=0
+for _possible_branch in $branches; do
+  # Skip items that start with "pull/"
+  if [[ $_possible_branch == pull/* ]]; then
+    continue
+  fi
+  if [[ $_possible_branch == origin/* ]]; then
+    _possible_branch=$(echo "$_possible_branch" | sed 's/origin\///')
+  fi
+  echo "Possible Branch: $_possible_branch"
+  branch=$_possible_branch
+  num_branches_found=$((num_branches_found+1))
+done
+
+if [ "$num_branches_found" -ne 1 ]; then
+  echo "Error: Unable to find a single branch that matched git sha $current_commit_sha"
+  exit 1
+fi
+
+echo "Found branch: $branch"
+echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
+
+git checkout $branch
+git submodule update --init --recursive
@@ -3,13 +3,20 @@ name: Checks - formatting
 on:
   pull_request:
   workflow_dispatch:
+  issue_comment:
+    types: [created]
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.ref_name }}
+  cancel-in-progress: true
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.head_ref || github.ref_name }}
   cancel-in-progress: true
 
 jobs:
   format_check:
+    if: ${{ github.event_name != 'issue_comment' || (github.event_name == 'issue_comment' && startsWith(github.event.comment.body, '/autofix')) }}
     runs-on: ubuntu-latest
     container:
       image: ghcr.io/llnl/sundials_spack_cache:llvm-17.0.4-h4lflucc3v2vage45opbo2didtcuigsn.spack
@@ -64,3 +71,46 @@ jobs:
           name: format.patch
           path: |
             ${{ github.workspace }}/format.patch
+
+  apply_format:
+    if: ${{ always() && contains(join(needs.*.result, ','), 'failure') && (github.event_name == 'issue_comment' && startsWith(github.event.comment.body, '/autofix')) }}
+    needs: format_check
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+      # Checkout the GitHub created reference for the PR.
+      # The only way to do this is by using the "issue" number
+      # but that is really the PR number in this context.
+      # This is due to using an `issue_comment` event which
+      # is due to the GitHub Actions API that does not have
+      # a `pull_request_comment` event or something similar.
+      # This leaves us in a detached head state which is corrected
+      # in `apply-style/checkout.sh`
+      - name: Checkout repository code
+        uses: actions/checkout@v4
+        with:
+          ref: refs/pull/${{ github.event.issue.number }}/head
+          fetch-depth: 0
+
+      - name: Checkout the right git ref
+        run: ./.github/actions/apply-style/checkout.sh
+
+      - name: Download the git diff from format_check
+        uses: actions/download-artifact@v4
+        with:
+          name: format.patch
+
+      - name: Apply patch
+        run: |
+          git apply format.patch
+          rm format.patch
+
+      - name: Commit fixes
+        run: |
+          git config user.name "format-robot"
+          git config user.email "no-reply@llnl.gov"
+          if [ -n "$(git status --porcelain)" ]; then
+            git commit -am 'apply format updates'
+            git push
+          fi
@@ -3,13 +3,20 @@ name: Checks - spelling
 on:
   pull_request:
   workflow_dispatch:
+  issue_comment:
+    types: [created]
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.ref_name }}
+  cancel-in-progress: true
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.head_ref || github.ref_name }}
   cancel-in-progress: true
 
 jobs:
   spelling_check:
+    if: ${{ github.event_name != 'issue_comment' || (github.event_name == 'issue_comment' && startsWith(github.event.comment.body, '/autofix')) }}
     runs-on: ubuntu-latest
     steps:
       - name: Install python3-pip
@@ -44,3 +51,46 @@ jobs:
           name: spelling.patch
           path: |
             ${{ github.workspace }}/spelling.patch
+
+  apply_spelling:
+    if: ${{ always() && contains(join(needs.*.result, ','), 'failure') && (github.event_name == 'issue_comment' && startsWith(github.event.comment.body, '/autofix')) }}
+    needs: spelling_check
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+      # Checkout the GitHub created reference for the PR.
+      # The only way to do this is by using the "issue" number
+      # but that is really the PR number in this context.
+      # This is due to using an `issue_comment` event which
+      # is due to the GitHub Actions API that does not have
+      # a `pull_request_comment` event or something similar.
+      # This leaves us in a detached head state which is corrected
+      # in `apply-style/checkout.sh`
+      - name: Checkout repository code
+        uses: actions/checkout@v4
+        with:
+          ref: refs/pull/${{ github.event.issue.number }}/head
+          fetch-depth: 0
+
+      - name: Checkout the right git ref
+        run: ./.github/actions/apply-style/checkout.sh
+
+      - name: Download the git diff from spelling_check
+        uses: actions/download-artifact@v4
+        with:
+          name: spelling.patch
+
+      - name: Apply patch
+        run: |
+          git apply spelling.patch
+          rm spelling.patch
+
+      - name: Commit fixes
+        run: |
+          git config user.name "format-robot"
+          git config user.email "no-reply@llnl.gov"
+          if [ -n "$(git status --porcelain)" ]; then
+            git commit -am 'apply spelling updates'
+            git push
+          fi
@@ -3,6 +3,12 @@ name: Checks - swig
 on:
   pull_request:
   workflow_dispatch:
+  issue_comment:
+    types: [created]
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.ref_name }}
+  cancel-in-progress: true
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.head_ref || github.ref_name }}
@@ -52,3 +58,46 @@ jobs:
           name: swig.patch
           path: |
             ${{ github.workspace }}/swig.patch
+
+  apply_swig:
+    if: ${{ always() && contains(join(needs.*.result, ','), 'failure') && (github.event_name == 'issue_comment' && startsWith(github.event.comment.body, '/autofix')) }}
+    needs: swig_check
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+      # Checkout the GitHub created reference for the PR.
+      # The only way to do this is by using the "issue" number
+      # but that is really the PR number in this context.
+      # This is due to using an `issue_comment` event which
+      # is due to the GitHub Actions API that does not have
+      # a `pull_request_comment` event or something similar.
+      # This leaves us in a detached head state which is corrected
+      # in `apply-style/checkout.sh`
+      - name: Checkout repository code
+        uses: actions/checkout@v4
+        with:
+          ref: refs/pull/${{ github.event.issue.number }}/head
+          fetch-depth: 0
+
+      - name: Checkout the right git ref
+        run: ./.github/actions/apply-style/checkout.sh
+
+      - name: Download the git diff from swig_check
+        uses: actions/download-artifact@v4
+        with:
+          name: swig.patch
+
+      - name: Apply patch
+        run: |
+          git apply swig.patch
+          rm swig.patch
+
+      - name: Commit fixes
+        run: |
+          git config user.name "format-robot"
+          git config user.email "no-reply@llnl.gov"
+          if [ -n "$(git status --porcelain)" ]; then
+            git commit -am 'apply swig updates'
+            git push
+          fi
@@ -0,0 +1,79 @@
+name: pysundials-official wheels
+
+on:
+  push:
+    branches:
+      - main
+      - develop
+      - feature/python-nanobind # TODO(CJB): remove once PR is open
+  pull_request:
+  merge_group:
+  workflow_dispatch:
+  # release:
+  #   types:
+  #     - published
+
+jobs:
+  build_sdist:
+    name: Build SDist
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        submodules: true
+
+    - name: Build SDist
+      run: pipx run build --sdist
+
+    - name: Check metadata
+      run: pipx run twine check dist/*
+
+    - uses: actions/upload-artifact@v4
+      with:
+        name: dist-sdist
+        path: dist/*.tar.gz
+
+
+  build_wheels:
+    name: Wheels on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-13, macos-14, windows-latest]
+
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        submodules: true
+
+    - uses: pypa/cibuildwheel@v2.22
+
+    - name: Verify clean directory
+      run: git diff --exit-code
+      shell: bash
+
+    - name: Upload wheels
+      uses: actions/upload-artifact@v4
+      with:
+        path: wheelhouse/*.whl
+        name: dist-${{ matrix.os }}
+
+  # upload_all:
+  #   name: Upload if release
+  #   needs: [build_wheels, build_sdist]
+  #   runs-on: ubuntu-latest
+  #   if: github.event_name == 'release' && github.event.action == 'published'
+
+  #   steps:
+  #   - uses: actions/setup-python@v5
+  #   - uses: actions/download-artifact@v4
+  #     with:
+  #       path: dist
+  #       pattern: dist-*
+  #       merge-multiple: true
+
+  #   - uses: pypa/gh-action-pypi-publish@release/v1
+  #     with:
+  #       user: __token__
+  #       password: ${{ secrets.pypi_password }}
@@ -19,6 +19,7 @@
 /.pydevproject
 .vscode
 compile_commands.json
+.venv
 .clangd
 
 # custom test environment setup script
@@ -82,3 +83,7 @@ uberenv_libs
 
 # tools
 /tools/suntools/__pycache__
+
+# python
+.pytest_cache
+__pycache__
@@ -235,6 +235,10 @@ if(SUNDIALS_ENABLE_EXTERNAL_ADDONS)
   add_subdirectory(external)
 endif()
 
+if(SUNDIALS_ENABLE_PYTHON)
+  add_subdirectory(bindings/pysundials)
+endif()
+
 # ===============================================================
 # Install configuration header files and license file.
 # ===============================================================