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Single reads as input possible? #66

@Krannich479

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@Krannich479

Hi,
I am attempting to assemble PE short-read data (2x150bp, FASTQ). However, I have some single reads too due to unaligned mates.
I understand that a first step is to convert my pair1.fq and pair2.fq into an interleaved reads.fa (i.e. reads in a pair are consecutive in the FASTA). But is there a possibility to include the single reads too? I am looking for something comparable to SPAdes' or Minia's -s option.

Any help/info appreciated. Thanks!

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