Update renv dependencies

Author: lorenzwalthert

renv.lock

@@ -4,7 +4,7 @@
     "Repositories": [
       {
         "Name": "RSPM",
-        "URL": "https://packagemanager.posit.co/cran/2024-09-12"
+        "URL": "https://packagemanager.posit.co/cran/2024-10-11"
       }
     ]
   },
@@ -137,10 +137,10 @@
     },
     "commonmark": {
       "Package": "commonmark",
-      "Version": "1.9.1",
+      "Version": "1.9.2",
       "Source": "Repository",
       "Repository": "RSPM",
-      "Hash": "5d8225445acb167abf7797de48b2ee3c"
+      "Hash": "14eb0596f987c71535d07c3aff814742"
     },
     "cpp11": {
       "Package": "cpp11",
@@ -214,14 +214,13 @@
     },
     "evaluate": {
       "Package": "evaluate",
-      "Version": "0.24.0",
+      "Version": "1.0.1",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
-        "R",
-        "methods"
+        "R"
       ],
-      "Hash": "a1066cbc05caee9a4bf6d90f194ff4da"
+      "Hash": "3fd29944b231036ad67c3edb32e02201"
     },
     "fs": {
       "Package": "fs",
@@ -236,14 +235,14 @@
     },
     "glue": {
       "Package": "glue",
-      "Version": "1.7.0",
+      "Version": "1.8.0",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "R",
         "methods"
       ],
-      "Hash": "e0b3a53876554bd45879e596cdb10a52"
+      "Hash": "5899f1eaa825580172bb56c08266f37c"
     },
     "here": {
       "Package": "here",
@@ -268,15 +267,15 @@
     },
     "hunspell": {
       "Package": "hunspell",
-      "Version": "3.0.4",
+      "Version": "3.0.5",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "R",
         "Rcpp",
         "digest"
       ],
-      "Hash": "f543163714aba1ff9e8cfe76d8d15381"
+      "Hash": "e58f80d4c5b4f0bab1456956d6ca6aad"
     },
     "knitr": {
       "Package": "knitr",
@@ -400,14 +399,14 @@
     },
     "ps": {
       "Package": "ps",
-      "Version": "1.7.7",
+      "Version": "1.8.0",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "R",
         "utils"
       ],
-      "Hash": "878b467580097e9c383acbb16adab57a"
+      "Hash": "4b9c8485b0c7eecdf0a9ba5132a45576"
     },
     "purrr": {
       "Package": "purrr",
@@ -440,13 +439,13 @@
     },
     "renv": {
       "Package": "renv",
-      "Version": "1.0.7",
+      "Version": "1.0.10",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "utils"
       ],
-      "Hash": "397b7b2a265bc5a7a06852524dabae20"
+      "Hash": "d0387d5687ec933dd7587efd4cfa2d85"
     },
     "rex": {
       "Package": "rex",
@@ -507,7 +506,7 @@
     },
     "spelling": {
       "Package": "spelling",
-      "Version": "2.3.0",
+      "Version": "2.3.1",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
@@ -516,7 +515,7 @@
         "knitr",
         "xml2"
       ],
-      "Hash": "632e9e83d3dc774d361b9415b15642bb"
+      "Hash": "e167300a047e21d28c754b00cbfc55ef"
     },
     "stringi": {
       "Package": "stringi",
@@ -595,7 +594,7 @@
     },
     "xfun": {
       "Package": "xfun",
-      "Version": "0.47",
+      "Version": "0.48",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
@@ -604,7 +603,7 @@
         "stats",
         "tools"
       ],
-      "Hash": "36ab21660e2d095fef0d83f689e0477c"
+      "Hash": "89e455b87c84e227eb7f60a1b4e5fe1f"
     },
     "xml2": {
       "Package": "xml2",

renv/activate.R

@@ -2,7 +2,7 @@
 local({
 
   # the requested version of renv
-  version <- "1.0.7"
+  version <- "1.0.10"
   attr(version, "sha") <- NULL
 
   # the project directory
@@ -98,6 +98,66 @@ local({
     unloadNamespace("renv")
 
   # load bootstrap tools   
+  ansify <- function(text) {
+    if (renv_ansify_enabled())
+      renv_ansify_enhanced(text)
+    else
+      renv_ansify_default(text)
+  }
+  
+  renv_ansify_enabled <- function() {
+  
+    override <- Sys.getenv("RENV_ANSIFY_ENABLED", unset = NA)
+    if (!is.na(override))
+      return(as.logical(override))
+  
+    pane <- Sys.getenv("RSTUDIO_CHILD_PROCESS_PANE", unset = NA)
+    if (identical(pane, "build"))
+      return(FALSE)
+  
+    testthat <- Sys.getenv("TESTTHAT", unset = "false")
+    if (tolower(testthat) %in% "true")
+      return(FALSE)
+  
+    iderun <- Sys.getenv("R_CLI_HAS_HYPERLINK_IDE_RUN", unset = "false")
+    if (tolower(iderun) %in% "false")
+      return(FALSE)
+  
+    TRUE
+  
+  }
+  
+  renv_ansify_default <- function(text) {
+    text
+  }
+  
+  renv_ansify_enhanced <- function(text) {
+  
+    # R help links
+    pattern <- "`\\?(renv::(?:[^`])+)`"
+    replacement <- "`\033]8;;ide:help:\\1\a?\\1\033]8;;\a`"
+    text <- gsub(pattern, replacement, text, perl = TRUE)
+  
+    # runnable code
+    pattern <- "`(renv::(?:[^`])+)`"
+    replacement <- "`\033]8;;ide:run:\\1\a\\1\033]8;;\a`"
+    text <- gsub(pattern, replacement, text, perl = TRUE)
+  
+    # return ansified text
+    text
+  
+  }
+  
+  renv_ansify_init <- function() {
+  
+    envir <- renv_envir_self()
+    if (renv_ansify_enabled())
+      assign("ansify", renv_ansify_enhanced, envir = envir)
+    else
+      assign("ansify", renv_ansify_default, envir = envir)
+  
+  }
+  
   `%||%` <- function(x, y) {
     if (is.null(x)) y else x
   }
@@ -142,7 +202,10 @@ local({
     # compute common indent
     indent <- regexpr("[^[:space:]]", lines)
     common <- min(setdiff(indent, -1L)) - leave
-    paste(substring(lines, common), collapse = "\n")
+    text <- paste(substring(lines, common), collapse = "\n")
+  
+    # substitute in ANSI links for executable renv code
+    ansify(text)
 
   }
 
@@ -306,7 +369,11 @@ local({
     )
 
     if ("headers" %in% names(formals(utils::download.file)))
-      args$headers <- renv_bootstrap_download_custom_headers(url)
+    {
+      headers <- renv_bootstrap_download_custom_headers(url)
+      if (length(headers) && is.character(headers))
+        args$headers <- headers
+    }
 
     do.call(utils::download.file, args)
 
@@ -385,10 +452,22 @@ local({
     for (type in types) {
       for (repos in renv_bootstrap_repos()) {
 
+        # build arguments for utils::available.packages() call
+        args <- list(type = type, repos = repos)
+  
+        # add custom headers if available -- note that
+        # utils::available.packages() will pass this to download.file()
+        if ("headers" %in% names(formals(utils::download.file)))
+        {
+          headers <- renv_bootstrap_download_custom_headers(url)
+          if (length(headers) && is.character(headers))
+            args$headers <- headers
+        }
+  
         # retrieve package database
         db <- tryCatch(
           as.data.frame(
-            utils::available.packages(type = type, repos = repos),
+            do.call(utils::available.packages, args),
             stringsAsFactors = FALSE
           ),
           error = identity
@@ -470,23 +549,31 @@ local({
 
   }
 
+  renv_bootstrap_github_token <- function() {
+    for (envvar in c("GITHUB_TOKEN", "GITHUB_PAT", "GH_TOKEN")) {
+      envval <- Sys.getenv(envvar, unset = NA)
+      if (!is.na(envval))
+        return(envval)
+    }
+  }
+  
   renv_bootstrap_download_github <- function(version) {
 
     enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE")
     if (!identical(enabled, "TRUE"))
       return(FALSE)
 
     # prepare download options
-    pat <- Sys.getenv("GITHUB_PAT")
-    if (nzchar(Sys.which("curl")) && nzchar(pat)) {
+    token <- renv_bootstrap_github_token()
+    if (nzchar(Sys.which("curl")) && nzchar(token)) {
       fmt <- "--location --fail --header \"Authorization: token %s\""
-      extra <- sprintf(fmt, pat)
+      extra <- sprintf(fmt, token)
       saved <- options("download.file.method", "download.file.extra")
       options(download.file.method = "curl", download.file.extra = extra)
       on.exit(do.call(base::options, saved), add = TRUE)
-    } else if (nzchar(Sys.which("wget")) && nzchar(pat)) {
+    } else if (nzchar(Sys.which("wget")) && nzchar(token)) {
       fmt <- "--header=\"Authorization: token %s\""
-      extra <- sprintf(fmt, pat)
+      extra <- sprintf(fmt, token)
       saved <- options("download.file.method", "download.file.extra")
       options(download.file.method = "wget", download.file.extra = extra)
       on.exit(do.call(base::options, saved), add = TRUE)