diff --git a/DESCRIPTION b/DESCRIPTION index a42a8fbdc..52cb4bc4b 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: precommit Title: Pre-Commit Hooks -Version: 0.4.3.9006 +Version: 0.4.3.9007 Author: Lorenz Walthert Maintainer: Lorenz Walthert Description: Useful git hooks for R building on top of the multi-language diff --git a/inst/pre-commit-config-pkg.yaml b/inst/pre-commit-config-pkg.yaml index 7577e96e4..841bb165f 100644 --- a/inst/pre-commit-config-pkg.yaml +++ b/inst/pre-commit-config-pkg.yaml @@ -2,7 +2,7 @@ # R specific hooks: https://github.com/lorenzwalthert/precommit repos: - repo: https://github.com/lorenzwalthert/precommit - rev: 0.4.3.9006 + rev: 0.4.3.9007 hooks: - id: style-files args: [--style_pkg=styler, --style_fun=tidyverse_style] diff --git a/inst/pre-commit-config-proj.yaml b/inst/pre-commit-config-proj.yaml index 7fd8ac082..1a12fcbf0 100644 --- a/inst/pre-commit-config-proj.yaml +++ b/inst/pre-commit-config-proj.yaml @@ -2,7 +2,7 @@ # R specific hooks: https://github.com/lorenzwalthert/precommit repos: - repo: https://github.com/lorenzwalthert/precommit - rev: 0.4.3.9006 + rev: 0.4.3.9007 hooks: - id: style-files args: [--style_pkg=styler, --style_fun=tidyverse_style] diff --git a/renv.lock b/renv.lock index fbdb5700c..49afbd989 100644 --- a/renv.lock +++ b/renv.lock @@ -1,10 +1,10 @@ { "R": { - "Version": "4.4.2", + "Version": "4.4.3", "Repositories": [ { "Name": "RSPM", - "URL": "https://packagemanager.posit.co/cran/2025-01-29" + "URL": "https://packagemanager.posit.co/cran/2025-03-12" } ] }, @@ -13,406 +13,1098 @@ "Package": "R.cache", "Version": "0.16.0", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "R.oo", - "R.utils", - "digest", - "utils" + "Depends": [ + "R (>= 2.14.0)" ], - "Hash": "fe539ca3f8efb7410c3ae2cf5fe6c0f8" + "Imports": [ + "utils", + "R.methodsS3 (>= 1.8.1)", + "R.oo (>= 1.24.0)", + "R.utils (>= 2.10.1)", + "digest (>= 0.6.13)" + ], + "Title": "Fast and Light-Weight Caching (Memoization) of Objects and Results to Speed Up Computations", + "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))", + "Author": "Henrik Bengtsson [aut, cre, cph]", + "Maintainer": "Henrik Bengtsson ", + "Description": "Memoization can be used to speed up repetitive and computational expensive function calls. The first time a function that implements memoization is called the results are stored in a cache memory. The next time the function is called with the same set of parameters, the results are momentarily retrieved from the cache avoiding repeating the calculations. With this package, any R object can be cached in a key-value storage where the key can be an arbitrary set of R objects. The cache memory is persistent (on the file system).", + "License": "LGPL (>= 2.1)", + "LazyLoad": "TRUE", + "URL": "https://github.com/HenrikBengtsson/R.cache", + "BugReports": "https://github.com/HenrikBengtsson/R.cache/issues", + "RoxygenNote": "7.2.1", + "NeedsCompilation": "no", + "Repository": "RSPM", + "Encoding": "UTF-8" }, "R.methodsS3": { "Package": "R.methodsS3", "Version": "1.8.2", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", + "Depends": [ + "R (>= 2.13.0)" + ], + "Imports": [ "utils" ], - "Hash": "278c286fd6e9e75d0c2e8f731ea445c8" + "Suggests": [ + "codetools" + ], + "Title": "S3 Methods Simplified", + "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))", + "Author": "Henrik Bengtsson [aut, cre, cph]", + "Maintainer": "Henrik Bengtsson ", + "Description": "Methods that simplify the setup of S3 generic functions and S3 methods. Major effort has been made in making definition of methods as simple as possible with a minimum of maintenance for package developers. For example, generic functions are created automatically, if missing, and naming conflict are automatically solved, if possible. The method setMethodS3() is a good start for those who in the future may want to migrate to S4. This is a cross-platform package implemented in pure R that generates standard S3 methods.", + "License": "LGPL (>= 2.1)", + "LazyLoad": "TRUE", + "URL": "https://github.com/HenrikBengtsson/R.methodsS3", + "BugReports": "https://github.com/HenrikBengtsson/R.methodsS3/issues", + "NeedsCompilation": "no", + "Repository": "RSPM", + "Encoding": "UTF-8" }, "R.oo": { "Package": "R.oo", "Version": "1.27.0", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", + "Depends": [ + "R (>= 2.13.0)", + "R.methodsS3 (>= 1.8.2)" + ], + "Imports": [ "methods", "utils" ], - "Hash": "6ac79ff194202248cf946fe3a5d6d498" + "Suggests": [ + "tools" + ], + "Title": "R Object-Oriented Programming with or without References", + "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))", + "Author": "Henrik Bengtsson [aut, cre, cph]", + "Maintainer": "Henrik Bengtsson ", + "Description": "Methods and classes for object-oriented programming in R with or without references. Large effort has been made on making definition of methods as simple as possible with a minimum of maintenance for package developers. The package has been developed since 2001 and is now considered very stable. This is a cross-platform package implemented in pure R that defines standard S3 classes without any tricks.", + "License": "LGPL (>= 2.1)", + "LazyLoad": "TRUE", + "URL": "https://github.com/HenrikBengtsson/R.oo", + "BugReports": "https://github.com/HenrikBengtsson/R.oo/issues", + "NeedsCompilation": "no", + "Repository": "RSPM", + "Encoding": "UTF-8" }, "R.utils": { "Package": "R.utils", - "Version": "2.12.3", + "Version": "2.13.0", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "R.methodsS3", - "R.oo", + "Depends": [ + "R (>= 2.14.0)", + "R.oo" + ], + "Imports": [ "methods", + "utils", "tools", - "utils" + "R.methodsS3" + ], + "Suggests": [ + "datasets", + "digest (>= 0.6.10)" ], - "Hash": "3dc2829b790254bfba21e60965787651" + "Title": "Various Programming Utilities", + "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))", + "Author": "Henrik Bengtsson [aut, cre, cph]", + "Maintainer": "Henrik Bengtsson ", + "Description": "Utility functions useful when programming and developing R packages.", + "License": "LGPL (>= 2.1)", + "LazyLoad": "TRUE", + "URL": "https://henrikbengtsson.github.io/R.utils/, https://github.com/HenrikBengtsson/R.utils", + "BugReports": "https://github.com/HenrikBengtsson/R.utils/issues", + "NeedsCompilation": "no", + "Repository": "RSPM", + "Encoding": "UTF-8" }, "R6": { "Package": "R6", - "Version": "2.5.1", + "Version": "2.6.1", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" + "Title": "Encapsulated Classes with Reference Semantics", + "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Creates classes with reference semantics, similar to R's built-in reference classes. Compared to reference classes, R6 classes are simpler and lighter-weight, and they are not built on S4 classes so they do not require the methods package. These classes allow public and private members, and they support inheritance, even when the classes are defined in different packages.", + "License": "MIT + file LICENSE", + "URL": "https://r6.r-lib.org, https://github.com/r-lib/R6", + "BugReports": "https://github.com/r-lib/R6/issues", + "Depends": [ + "R (>= 3.6)" + ], + "Suggests": [ + "lobstr", + "testthat (>= 3.0.0)" ], - "Hash": "470851b6d5d0ac559e9d01bb352b4021" + "Config/Needs/website": "tidyverse/tidytemplate, ggplot2, microbenchmark, scales", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd]", + "Maintainer": "Winston Chang ", + "Repository": "RSPM" }, "Rcpp": { "Package": "Rcpp", "Version": "1.0.14", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ + "Title": "Seamless R and C++ Integration", + "Date": "2025-01-11", + "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))", + "Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at , the paper by Eddelbuettel and Francois (2011, ), the book by Eddelbuettel (2013, ) and the paper by Eddelbuettel and Balamuta (2018, ); see 'citation(\"Rcpp\")' for details.", + "Imports": [ "methods", "utils" ], - "Hash": "e7bdd9ee90e96921ca8a0f1972d66682" + "Suggests": [ + "tinytest", + "inline", + "rbenchmark", + "pkgKitten (>= 0.1.2)" + ], + "URL": "https://www.rcpp.org, https://dirk.eddelbuettel.com/code/rcpp.html, https://github.com/RcppCore/Rcpp", + "License": "GPL (>= 2)", + "BugReports": "https://github.com/RcppCore/Rcpp/issues", + "MailingList": "rcpp-devel@lists.r-forge.r-project.org", + "RoxygenNote": "6.1.1", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), JJ Allaire [aut] (), Kevin Ushey [aut] (), Qiang Kou [aut] (), Nathan Russell [aut], Iñaki Ucar [aut] (), Doug Bates [aut] (), John Chambers [aut]", + "Maintainer": "Dirk Eddelbuettel ", + "Repository": "RSPM" }, "V8": { "Package": "V8", - "Version": "6.0.0", + "Version": "6.0.1", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "Rcpp", - "curl", - "jsonlite", + "Type": "Package", + "Title": "Embedded JavaScript and WebAssembly Engine for R", + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Jan Marvin\", \"Garbuszus\", role = \"ctb\"))", + "Description": "An R interface to V8 : Google's open source JavaScript and WebAssembly engine. This package can be compiled either with V8 version 6 and up or NodeJS when built as a shared library.", + "License": "MIT + file LICENSE", + "URL": "https://jeroen.r-universe.dev/V8", + "BugReports": "https://github.com/jeroen/v8/issues", + "SystemRequirements": "V8 engine version 6+ is needed for ES6 and WASM support. On Linux you can build against libv8-dev (Debian) or v8-devel (Fedora). We also provide static libv8 binaries for most platforms, see the README for details.", + "NeedsCompilation": "yes", + "VignetteBuilder": "knitr", + "Imports": [ + "Rcpp (>= 0.12.12)", + "jsonlite (>= 1.0)", + "curl (>= 1.0)", "utils" ], - "Hash": "6603bfcbc7883a5fed41fb13042a3899" + "LinkingTo": [ + "Rcpp" + ], + "Suggests": [ + "testthat", + "knitr", + "rmarkdown" + ], + "RoxygenNote": "7.3.1", + "Language": "en-US", + "Encoding": "UTF-8", + "Biarch": "true", + "Author": "Jeroen Ooms [aut, cre] (), Jan Marvin Garbuszus [ctb]", + "Maintainer": "Jeroen Ooms ", + "Repository": "RSPM" }, "backports": { "Package": "backports", "Version": "1.5.0", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" + "Type": "Package", + "Title": "Reimplementations of Functions Introduced Since R-3.0.0", + "Authors@R": "c( person(\"Michel\", \"Lang\", NULL, \"michellang@gmail.com\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Duncan\", \"Murdoch\", NULL, \"murdoch.duncan@gmail.com\", role = c(\"aut\")), person(\"R Core Team\", role = \"aut\"))", + "Maintainer": "Michel Lang ", + "Description": "Functions introduced or changed since R v3.0.0 are re-implemented in this package. The backports are conditionally exported in order to let R resolve the function name to either the implemented backport, or the respective base version, if available. Package developers can make use of new functions or arguments by selectively importing specific backports to support older installations.", + "URL": "https://github.com/r-lib/backports", + "BugReports": "https://github.com/r-lib/backports/issues", + "License": "GPL-2 | GPL-3", + "NeedsCompilation": "yes", + "ByteCompile": "yes", + "Depends": [ + "R (>= 3.0.0)" ], - "Hash": "e1e1b9d75c37401117b636b7ae50827a" + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "Author": "Michel Lang [cre, aut] (), Duncan Murdoch [aut], R Core Team [aut]", + "Repository": "RSPM" }, "brew": { "Package": "brew", "Version": "1.0-10", "Source": "Repository", + "Type": "Package", + "Title": "Templating Framework for Report Generation", + "Authors@R": "c( person(\"Jeffrey\", \"Horner\", role = c(\"aut\", \"cph\")), person(\"Greg\", \"Hunt\", , \"greg@firmansyah.com\", role = c(\"aut\", \"cre\", \"cph\")) )", + "Description": "Implements a templating framework for mixing text and R code for report generation. brew template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.", + "License": "GPL (>= 2)", + "URL": "https://github.com/gregfrog/brew", + "BugReports": "https://github.com/gregfrog/brew/issues", + "Suggests": [ + "testthat (>= 3.0.0)" + ], + "Config/testthat/edition": "3", + "Encoding": "UTF-8", "Repository": "RSPM", - "Hash": "8f4a384e19dccd8c65356dc096847b76" + "NeedsCompilation": "no", + "Author": "Jeffrey Horner [aut, cph], Greg Hunt [aut, cre, cph]", + "Maintainer": "Greg Hunt " }, "callr": { "Package": "callr", "Version": "3.7.6", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", + "Title": "Call R from R", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", + "Description": "It is sometimes useful to perform a computation in a separate R process, without affecting the current R process at all. This packages does exactly that.", + "License": "MIT + file LICENSE", + "URL": "https://callr.r-lib.org, https://github.com/r-lib/callr", + "BugReports": "https://github.com/r-lib/callr/issues", + "Depends": [ + "R (>= 3.4)" + ], + "Imports": [ + "processx (>= 3.6.1)", "R6", - "processx", "utils" ], - "Hash": "d7e13f49c19103ece9e58ad2d83a7354" + "Suggests": [ + "asciicast (>= 2.3.1)", + "cli (>= 1.1.0)", + "mockery", + "ps", + "rprojroot", + "spelling", + "testthat (>= 3.2.0)", + "withr (>= 2.3.0)" + ], + "Config/Needs/website": "r-lib/asciicast, glue, htmlwidgets, igraph, tibble, tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "Language": "en-US", + "RoxygenNote": "7.3.1.9000", + "NeedsCompilation": "no", + "Author": "Gábor Csárdi [aut, cre, cph] (), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "RSPM" }, "cli": { "Package": "cli", - "Version": "3.6.3", + "Version": "3.6.4", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", + "Title": "Helpers for Developing Command Line Interfaces", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"gabor@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"Müller\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Supports custom themes via a 'CSS'-like language. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.", + "License": "MIT + file LICENSE", + "URL": "https://cli.r-lib.org, https://github.com/r-lib/cli", + "BugReports": "https://github.com/r-lib/cli/issues", + "Depends": [ + "R (>= 3.4)" + ], + "Imports": [ "utils" ], - "Hash": "b21916dd77a27642b447374a5d30ecf3" + "Suggests": [ + "callr", + "covr", + "crayon", + "digest", + "glue (>= 1.6.0)", + "grDevices", + "htmltools", + "htmlwidgets", + "knitr", + "methods", + "processx", + "ps (>= 1.3.4.9000)", + "rlang (>= 1.0.2.9003)", + "rmarkdown", + "rprojroot", + "rstudioapi", + "testthat (>= 3.2.0)", + "tibble", + "whoami", + "withr" + ], + "Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc, fansi, prettyunits, sessioninfo, tidyverse/tidytemplate, usethis, vctrs", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (), Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "RSPM" }, "codetools": { "Package": "codetools", "Version": "0.2-20", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" + "Priority": "recommended", + "Author": "Luke Tierney ", + "Description": "Code analysis tools for R.", + "Title": "Code Analysis Tools for R", + "Depends": [ + "R (>= 2.1)" ], - "Hash": "61e097f35917d342622f21cdc79c256e" + "Maintainer": "Luke Tierney ", + "URL": "https://gitlab.com/luke-tierney/codetools", + "License": "GPL", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "commonmark": { "Package": "commonmark", "Version": "1.9.2", "Source": "Repository", - "Repository": "RSPM", - "Hash": "14eb0596f987c71535d07c3aff814742" + "Type": "Package", + "Title": "High Performance CommonMark and Github Markdown Rendering in R", + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", ,\"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"John MacFarlane\", role = \"cph\", comment = \"Author of cmark\"))", + "Description": "The CommonMark specification defines a rationalized version of markdown syntax. This package uses the 'cmark' reference implementation for converting markdown text into various formats including html, latex and groff man. In addition it exposes the markdown parse tree in xml format. Also includes opt-in support for GFM extensions including tables, autolinks, and strikethrough text.", + "License": "BSD_2_clause + file LICENSE", + "URL": "https://docs.ropensci.org/commonmark/ https://ropensci.r-universe.dev/commonmark", + "BugReports": "https://github.com/r-lib/commonmark/issues", + "Suggests": [ + "curl", + "testthat", + "xml2" + ], + "RoxygenNote": "7.2.3", + "Language": "en-US", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (), John MacFarlane [cph] (Author of cmark)", + "Maintainer": "Jeroen Ooms ", + "Repository": "RSPM" }, "cpp11": { "Package": "cpp11", - "Version": "0.5.1", + "Version": "0.5.2", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" + "Title": "A C++11 Interface for R's C Interface", + "Authors@R": "c( person(\"Davis\", \"Vaughan\", email = \"davis@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Jim\",\"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Benjamin\", \"Kietzman\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Provides a header only, C++11 interface to R's C interface. Compared to other approaches 'cpp11' strives to be safe against long jumps from the C API as well as C++ exceptions, conform to normal R function semantics and supports interaction with 'ALTREP' vectors.", + "License": "MIT + file LICENSE", + "URL": "https://cpp11.r-lib.org, https://github.com/r-lib/cpp11", + "BugReports": "https://github.com/r-lib/cpp11/issues", + "Depends": [ + "R (>= 4.0.0)" ], - "Hash": "9df43854f1c84685d095ed6270b52387" - }, - "crayon": { - "Package": "crayon", - "Version": "1.5.3", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "grDevices", - "methods", - "utils" + "Suggests": [ + "bench", + "brio", + "callr", + "cli", + "covr", + "decor", + "desc", + "ggplot2", + "glue", + "knitr", + "lobstr", + "mockery", + "progress", + "rmarkdown", + "scales", + "Rcpp", + "testthat (>= 3.2.0)", + "tibble", + "utils", + "vctrs", + "withr" ], - "Hash": "859d96e65ef198fd43e82b9628d593ef" + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/Needs/cpp11/cpp_register": "brio, cli, decor, desc, glue, tibble, vctrs", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Davis Vaughan [aut, cre] (), Jim Hester [aut] (), Romain François [aut] (), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Davis Vaughan ", + "Repository": "RSPM" }, "curl": { "Package": "curl", - "Version": "6.2.0", + "Version": "6.2.1", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" + "Type": "Package", + "Title": "A Modern and Flexible Web Client for R", + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Posit Software, PBC\", role = \"cph\"))", + "Description": "Bindings to 'libcurl' for performing fully configurable HTTP/FTP requests where responses can be processed in memory, on disk, or streaming via the callback or connection interfaces. 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Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.", + "URL": "https://github.com/eddelbuettel/digest, https://dirk.eddelbuettel.com/code/digest.html", + "BugReports": "https://github.com/eddelbuettel/digest/issues", + "Depends": [ + "R (>= 3.3.0)" + ], + "Imports": [ "utils" ], - "Hash": "33698c4b3127fc9f506654607fb73676" + "License": "GPL (>= 2)", + "Suggests": [ + "tinytest", + "simplermarkdown" + ], + "VignetteBuilder": "simplermarkdown", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Dirk Eddelbuettel [aut, cre] (), Antoine Lucas [ctb], Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (), Simon Urbanek [ctb] (), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb], Duncan Murdoch [ctb], Jim Hester [ctb], Wush Wu [ctb] (), Qiang Kou [ctb] (), Thierry Onkelinx [ctb] (), Michel Lang [ctb] (), Viliam Simko [ctb], Kurt Hornik [ctb] (), Radford Neal [ctb] (), Kendon Bell [ctb] (), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb], Ion Suruceanu [ctb], Bill Denney [ctb], Dirk Schumacher [ctb], András Svraka [ctb], Sergey Fedorov [ctb], Will Landau [ctb] (), Floris Vanderhaeghe [ctb] (), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (), Mark van der Loo [ctb] (), Chris Muir [ctb] (), Moritz Beller [ctb] (), Sebastian Campbell [ctb], Winston Chang [ctb] (), Dean Attali [ctb] (), Michael Chirico [ctb] (), Kevin Ushey [ctb]", + "Maintainer": "Dirk Eddelbuettel ", + "Repository": "RSPM" }, "docopt": { "Package": "docopt", "Version": "0.7.1", "Source": "Repository", - 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Declare the relative path of a file within your project with 'i_am()'. 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Source code of other languages is supported via Andre Simon's highlight package ().", + "Depends": [ + "R (>= 3.3.0)" + ], + "Imports": [ + "xfun (>= 0.18)" ], - "Hash": "d65ba49117ca223614f71b60d85b8ab7" + "Suggests": [ + "knitr", + "markdown", + "testit" + ], + "License": "GPL", + "URL": "https://github.com/yihui/highr", + "BugReports": "https://github.com/yihui/highr/issues", + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre] (), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", + "Maintainer": "Yihui Xie ", + "Repository": "RSPM" }, "hunspell": { "Package": "hunspell", "Version": "3.0.5", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", + "Type": "Package", + "Title": "High-Performance Stemmer, Tokenizer, and Spell Checker", + "Depends": [ + "R (>= 3.0.2)" + ], + "Encoding": "UTF-8", + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", ,\"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Authors of libhunspell\", role = \"cph\", comment = \"see AUTHORS file\"))", + "Description": "Low level spell checker and morphological analyzer based on the famous 'hunspell' library . The package can analyze or check individual words as well as parse text, latex, html or xml documents. For a more user-friendly interface use the 'spelling' package which builds on this package to automate checking of files, documentation and vignettes in all common formats.", + "License": "GPL-2 | LGPL-2.1 | MPL-1.1", + "URL": "https://docs.ropensci.org/hunspell/ https://ropensci.r-universe.dev/hunspell", + "BugReports": "https://github.com/ropensci/hunspell/issues", + "Imports": [ "Rcpp", "digest" ], - "Hash": "e58f80d4c5b4f0bab1456956d6ca6aad" + "LinkingTo": [ + "Rcpp (>= 0.12.12)" + ], + "Suggests": [ + "spelling", + "testthat", + "knitr", + "rmarkdown" + ], + "VignetteBuilder": "knitr", + "RoxygenNote": "7.2.3", + "Language": "en-US", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre], Authors of libhunspell [cph] (see AUTHORS file)", + "Maintainer": "Jeroen Ooms ", + "Repository": "RSPM" }, "jsonlite": { "Package": "jsonlite", - "Version": "1.8.9", + "Version": "1.9.1", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ + "Title": "A Simple and Robust JSON Parser and Generator for R", + "License": "MIT + file LICENSE", + "Depends": [ "methods" ], - "Hash": "4e993b65c2c3ffbffce7bb3e2c6f832b" + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Duncan\", \"Temple Lang\", role = \"ctb\"), person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment=\"author of bundled libyajl\"))", + "URL": "https://jeroen.r-universe.dev/jsonlite https://arxiv.org/abs/1403.2805", + "BugReports": "https://github.com/jeroen/jsonlite/issues", + "Maintainer": "Jeroen Ooms ", + "VignetteBuilder": "knitr, R.rsp", + "Description": "A reasonably fast JSON parser and generator, optimized for statistical data and the web. Offers simple, flexible tools for working with JSON in R, and is particularly powerful for building pipelines and interacting with a web API. The implementation is based on the mapping described in the vignette (Ooms, 2014). In addition to converting JSON data from/to R objects, 'jsonlite' contains functions to stream, validate, and prettify JSON data. The unit tests included with the package verify that all edge cases are encoded and decoded consistently for use with dynamic data in systems and applications.", + "Suggests": [ + "httr", + "vctrs", + "testthat", + "knitr", + "rmarkdown", + "R.rsp", + "sf" + ], + "RoxygenNote": "7.2.3", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)", + "Repository": "RSPM" }, "jsonvalidate": { "Package": "jsonvalidate", - "Version": "1.3.2", + "Version": "1.5.0", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ + "Title": "Validate 'JSON' Schema", + "Authors@R": "c(person(\"Rich\", \"FitzJohn\", role = c(\"aut\", \"cre\"), email = \"rich.fitzjohn@gmail.com\"), person(\"Rob\", \"Ashton\", role = \"aut\"), person(\"Alex\", \"Hill\", role = \"ctb\"), person(\"Alicia\", \"Schep\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Kara\", \"Woo\", role = \"ctb\"), person(\"Mathias\", \"Buus\", role = c(\"aut\", \"cph\"), comment = \"Author of bundled imjv library\"), person(\"Evgeny\", \"Poberezkin\", role = c(\"aut\", \"cph\"), comment = \"Author of bundled Ajv library\"))", + "Maintainer": "Rich FitzJohn ", + "Description": "Uses the node library 'is-my-json-valid' or 'ajv' to validate 'JSON' against a 'JSON' schema. Drafts 04, 06 and 07 of 'JSON' schema are supported.", + "License": "MIT + file LICENSE", + "URL": "https://docs.ropensci.org/jsonvalidate/, https://github.com/ropensci/jsonvalidate", + "BugReports": "https://github.com/ropensci/jsonvalidate/issues", + "Imports": [ + "R6", "V8" ], - "Hash": "cdc2843ef7f44f157198bb99aea7552d" + "Suggests": [ + "knitr", + "jsonlite", + "rmarkdown", + "testthat", + "withr" + ], + "RoxygenNote": "7.3.2", + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "Language": "en-GB", + "Config/testthat/edition": "3", + "NeedsCompilation": "no", + "Author": "Rich FitzJohn [aut, cre], Rob Ashton [aut], Alex Hill [ctb], Alicia Schep [ctb], Ian Lyttle [ctb], Kara Woo [ctb], Mathias Buus [aut, cph] (Author of bundled imjv library), Evgeny Poberezkin [aut, cph] (Author of bundled Ajv library)", + "Repository": "RSPM" }, "knitr": { "Package": "knitr", "Version": "1.49", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "evaluate", - "highr", + "Type": "Package", + "Title": "A General-Purpose Package for Dynamic Report Generation in R", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", \"Zvoleff\", role = \"ctb\"), person(\"Amar\", \"Al-Zubaidi\", role = \"ctb\"), person(\"Andre\", \"Simon\", role = \"ctb\", comment = \"the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de\"), person(\"Aron\", \"Atkins\", role = \"ctb\"), person(\"Aaron\", \"Wolen\", role = \"ctb\"), person(\"Ashley\", \"Manton\", role = \"ctb\"), person(\"Atsushi\", \"Yasumoto\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8335-495X\")), person(\"Ben\", \"Baumer\", role = \"ctb\"), person(\"Brian\", \"Diggs\", role = \"ctb\"), person(\"Brian\", \"Zhang\", role = \"ctb\"), person(\"Bulat\", \"Yapparov\", role = \"ctb\"), person(\"Cassio\", \"Pereira\", role = \"ctb\"), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person(\"David\", \"Hall\", role = \"ctb\"), person(\"David\", \"Hugh-Jones\", role = \"ctb\"), person(\"David\", \"Robinson\", role = \"ctb\"), person(\"Doug\", \"Hemken\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", role = \"ctb\"), person(\"Elio\", \"Campitelli\", role = \"ctb\"), person(\"Ellis\", \"Hughes\", role = \"ctb\"), person(\"Emily\", \"Riederer\", role = \"ctb\"), person(\"Fabian\", \"Hirschmann\", role = \"ctb\"), person(\"Fitch\", \"Simeon\", role = \"ctb\"), person(\"Forest\", \"Fang\", role = \"ctb\"), person(c(\"Frank\", \"E\", \"Harrell\", \"Jr\"), role = \"ctb\", comment = \"the Sweavel package at inst/misc/Sweavel.sty\"), person(\"Garrick\", \"Aden-Buie\", role = \"ctb\"), person(\"Gregoire\", \"Detrez\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Hao\", \"Zhu\", role = \"ctb\"), person(\"Heewon\", \"Jeon\", role = \"ctb\"), person(\"Henrik\", \"Bengtsson\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Hodges\", \"Daniel\", role = \"ctb\"), person(\"Jacob\", \"Bien\", role = \"ctb\"), person(\"Jake\", \"Burkhead\", role = \"ctb\"), person(\"James\", \"Manton\", role = \"ctb\"), person(\"Jared\", \"Lander\", role = \"ctb\"), person(\"Jason\", \"Punyon\", role = \"ctb\"), person(\"Javier\", \"Luraschi\", role = \"ctb\"), person(\"Jeff\", \"Arnold\", role = \"ctb\"), person(\"Jenny\", \"Bryan\", role = \"ctb\"), person(\"Jeremy\", \"Ashkenas\", role = c(\"ctb\", \"cph\"), comment = \"the CSS file at inst/misc/docco-classic.css\"), person(\"Jeremy\", \"Stephens\", role = \"ctb\"), person(\"Jim\", \"Hester\", role = \"ctb\"), person(\"Joe\", \"Cheng\", role = \"ctb\"), person(\"Johannes\", \"Ranke\", role = \"ctb\"), person(\"John\", \"Honaker\", role 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person(\"Michel\", \"Kuhlmann\", role = \"ctb\"), person(\"Miller\", \"Patrick\", role = \"ctb\"), person(\"Nacho\", \"Caballero\", role = \"ctb\"), person(\"Nick\", \"Salkowski\", role = \"ctb\"), person(\"Niels Richard\", \"Hansen\", role = \"ctb\"), person(\"Noam\", \"Ross\", role = \"ctb\"), person(\"Obada\", \"Mahdi\", role = \"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role = \"ctb\", comment=c(ORCID = \"0000-0002-9101-3362\")), person(\"Pedro\", \"Faria\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\"), person(\"Ramnath\", \"Vaidyanathan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Robert\", \"Krzyzanowski\", role = \"ctb\"), person(\"Rodrigo\", \"Copetti\", role = \"ctb\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Ruaridh\", \"Williamson\", role = \"ctb\"), person(\"Sagiru\", \"Mati\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1413-3974\")), person(\"Scott\", \"Kostyshak\", role = \"ctb\"), 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Programming techniques.", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ + "evaluate (>= 0.15)", + "highr (>= 0.11)", "methods", "tools", - "xfun", - "yaml" + "xfun (>= 0.48)", + "yaml (>= 2.1.19)" + ], + "Suggests": [ + "bslib", + "codetools", + "DBI (>= 0.4-1)", + "digest", + "formatR", + "gifski", + "gridSVG", + "htmlwidgets (>= 0.7)", + "jpeg", + "JuliaCall (>= 0.11.1)", + "magick", + "litedown", + "markdown (>= 1.3)", + "png", + "ragg", + "reticulate (>= 1.4)", + "rgl (>= 0.95.1201)", + "rlang", + "rmarkdown", + "sass", + "showtext", + "styler (>= 1.2.0)", + "targets (>= 0.6.0)", + "testit", + "tibble", + "tikzDevice (>= 0.10)", + "tinytex (>= 0.46)", + "webshot", + "rstudioapi", + "svglite" ], - "Hash": "9fcb189926d93c636dea94fbe4f44480" + "License": "GPL", + "URL": "https://yihui.org/knitr/", + "BugReports": "https://github.com/yihui/knitr/issues", + "Encoding": "UTF-8", + "VignetteBuilder": "litedown, knitr", + "SystemRequirements": "Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).", + "Collate": "'block.R' 'cache.R' 'utils.R' 'citation.R' 'hooks-html.R' 'plot.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre] (), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. 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"R", - "grDevices", - "graphics" + "Title": "Run Code 'With' Temporarily Modified Global State", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"Müller\", , \"krlmlr+r@mailbox.org\", role = \"aut\"), person(\"Kevin\", \"Ushey\", , \"kevinushey@gmail.com\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jennifer\", \"Bryan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "A set of functions to run code 'with' safely and temporarily modified global state. Many of these functions were originally a part of the 'devtools' package, this provides a simple package with limited dependencies to provide access to these functions.", + "License": "MIT + file LICENSE", + "URL": "https://withr.r-lib.org, https://github.com/r-lib/withr#readme", + "BugReports": "https://github.com/r-lib/withr/issues", + "Depends": [ + "R (>= 3.6.0)" ], - "Hash": "cc2d62c76458d425210d1eb1478b30b4" + "Imports": [ + "graphics", + "grDevices" + ], + "Suggests": [ + "callr", + "DBI", + "knitr", + "methods", + "rlang", + "rmarkdown (>= 2.12)", + "RSQLite", + "testthat (>= 3.0.0)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "Collate": "'aaa.R' 'collate.R' 'connection.R' 'db.R' 'defer-exit.R' 'standalone-defer.R' 'defer.R' 'devices.R' 'local_.R' 'with_.R' 'dir.R' 'env.R' 'file.R' 'language.R' 'libpaths.R' 'locale.R' 'makevars.R' 'namespace.R' 'options.R' 'par.R' 'path.R' 'rng.R' 'seed.R' 'wrap.R' 'sink.R' 'tempfile.R' 'timezone.R' 'torture.R' 'utils.R' 'with.R'", + "NeedsCompilation": "no", + "Author": "Jim Hester [aut], Lionel Henry [aut, cre], Kirill Müller [aut], Kevin Ushey [aut], Hadley Wickham [aut], Winston Chang [aut], Jennifer Bryan [ctb], Richard Cotton [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Lionel Henry ", + "Repository": "RSPM" }, "xfun": { "Package": "xfun", - "Version": "0.50", + "Version": "0.51", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", + "Type": "Package", + "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Daijiang\", \"Li\", role = \"ctb\"), person(\"Xianying\", \"Tan\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person() )", + "Description": "Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.", + "Depends": [ + "R (>= 3.2.0)" + ], + "Imports": [ "grDevices", "stats", "tools" ], - "Hash": "44ab88837d3f8dfc66a837299b887fa6" + "Suggests": [ + "testit", + "parallel", + "codetools", + "methods", + "rstudioapi", + "tinytex (>= 0.30)", + "mime", + "litedown (>= 0.4)", + "commonmark", + "knitr (>= 1.47)", + "remotes", + "pak", + "rhub", + "renv", + "curl", + "xml2", + "jsonlite", + "magick", + "yaml", + "qs", + "rmarkdown" + ], + "License": "MIT + file LICENSE", + "URL": "https://github.com/yihui/xfun", + "BugReports": "https://github.com/yihui/xfun/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "VignetteBuilder": "litedown", + "NeedsCompilation": "yes", + "Author": "Yihui Xie [aut, cre, cph] (, https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (), Christophe Dervieux [ctb]", + "Maintainer": "Yihui Xie ", + "Repository": "RSPM" }, "xml2": { "Package": "xml2", - "Version": "1.3.6", + "Version": "1.3.7", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", + "Title": "Parse XML", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", email = \"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Foundation\", role = \"ctb\", comment = \"Copy of R-project homepage cached as example\") )", + "Description": "Bindings to 'libxml2' for working with XML data using a simple, consistent interface based on 'XPath' expressions. Also supports XML schema validation; for 'XSLT' transformations see the 'xslt' package.", + "License": "MIT + file LICENSE", + "URL": "https://xml2.r-lib.org, https://r-lib.r-universe.dev/xml2", + "BugReports": "https://github.com/r-lib/xml2/issues", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ "cli", "methods", - "rlang" + "rlang (>= 1.1.0)" + ], + "Suggests": [ + "covr", + "curl", + "httr", + "knitr", + "magrittr", + "mockery", + "rmarkdown", + "testthat (>= 3.2.0)", + "xslt" ], - "Hash": "1d0336142f4cd25d8d23cd3ba7a8fb61" + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "SystemRequirements": "libxml2: libxml2-dev (deb), libxml2-devel (rpm)", + "Collate": "'S4.R' 'as_list.R' 'xml_parse.R' 'as_xml_document.R' 'classes.R' 'format.R' 'import-standalone-obj-type.R' 'import-standalone-purrr.R' 'import-standalone-types-check.R' 'init.R' 'nodeset_apply.R' 'paths.R' 'utils.R' 'xml2-package.R' 'xml_attr.R' 'xml_children.R' 'xml_document.R' 'xml_find.R' 'xml_missing.R' 'xml_modify.R' 'xml_name.R' 'xml_namespaces.R' 'xml_node.R' 'xml_nodeset.R' 'xml_path.R' 'xml_schema.R' 'xml_serialize.R' 'xml_structure.R' 'xml_text.R' 'xml_type.R' 'xml_url.R' 'xml_write.R' 'zzz.R'", + "Config/testthat/edition": "3", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Jeroen Ooms [aut, cre], Posit Software, PBC [cph, fnd], R Foundation [ctb] (Copy of R-project homepage cached as example)", + "Maintainer": "Jeroen Ooms ", + "Repository": "RSPM" }, "xmlparsedata": { "Package": "xmlparsedata", "Version": "1.0.5", "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" + "Title": "Parse Data of 'R' Code as an 'XML' Tree", + "Author": "Gábor Csárdi", + "Maintainer": "Gábor Csárdi ", + "Description": "Convert the output of 'utils::getParseData()' to an 'XML' tree, that one can search via 'XPath', and easier to manipulate in general.", + "License": "MIT + file LICENSE", + "LazyData": "true", + "URL": "https://github.com/r-lib/xmlparsedata#readme", + "BugReports": "https://github.com/r-lib/xmlparsedata/issues", + "RoxygenNote": "6.0.1", + "Suggests": [ + "covr", + "testthat", + "xml2" ], - "Hash": "45e4bf3c46476896e821fc0a408fb4fc" + "Depends": [ + "R (>= 3.0.0)" + ], + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Repository": "RSPM" }, "yaml": { "Package": "yaml", "Version": "2.3.10", "Source": "Repository", + "Type": "Package", + "Title": "Methods to Convert R Data to YAML and Back", + "Date": "2024-07-22", + "Suggests": [ + "RUnit" + ], + "Author": "Shawn P Garbett [aut], Jeremy Stephens [aut, cre], Kirill Simonov [aut], Yihui Xie [ctb], Zhuoer Dong [ctb], Hadley Wickham [ctb], Jeffrey Horner [ctb], reikoch [ctb], Will Beasley [ctb], Brendan O'Connor [ctb], Gregory R. Warnes [ctb], Michael Quinn [ctb], Zhian N. Kamvar [ctb], Charlie Gao [ctb]", + "Maintainer": "Shawn Garbett ", + "License": "BSD_3_clause + file LICENSE", + "Description": "Implements the 'libyaml' 'YAML' 1.1 parser and emitter () for R.", + "URL": "https://github.com/vubiostat/r-yaml/", + "BugReports": "https://github.com/vubiostat/r-yaml/issues", + "NeedsCompilation": "yes", "Repository": "RSPM", - "Hash": "51dab85c6c98e50a18d7551e9d49f76c" + "Encoding": "UTF-8" } } } diff --git a/renv/activate.R b/renv/activate.R index 0eb51088a..c9f594259 100644 --- a/renv/activate.R +++ b/renv/activate.R @@ -2,7 +2,7 @@ local({ # the requested version of renv - version <- "1.0.11" + version <- "1.1.2" attr(version, "sha") <- NULL # the project directory @@ -42,7 +42,7 @@ local({ return(FALSE) # next, check environment variables - # TODO: prefer using the configuration one in the future + # prefer using the configuration one in the future envvars <- c( "RENV_CONFIG_AUTOLOADER_ENABLED", "RENV_AUTOLOADER_ENABLED", @@ -135,12 +135,12 @@ local({ # R help links pattern <- "`\\?(renv::(?:[^`])+)`" - replacement <- "`\033]8;;ide:help:\\1\a?\\1\033]8;;\a`" + replacement <- "`\033]8;;x-r-help:\\1\a?\\1\033]8;;\a`" text <- gsub(pattern, replacement, text, perl = TRUE) # runnable code pattern <- "`(renv::(?:[^`])+)`" - replacement <- "`\033]8;;ide:run:\\1\a\\1\033]8;;\a`" + replacement <- "`\033]8;;x-r-run:\\1\a\\1\033]8;;\a`" text <- gsub(pattern, replacement, text, perl = TRUE) # return ansified text @@ -209,10 +209,6 @@ local({ } - startswith <- function(string, prefix) { - substring(string, 1, nchar(prefix)) == prefix - } - bootstrap <- function(version, library) { friendly <- renv_bootstrap_version_friendly(version) @@ -563,6 +559,9 @@ local({ # prepare download options token <- renv_bootstrap_github_token() + if (is.null(token)) + token <- "" + if (nzchar(Sys.which("curl")) && nzchar(token)) { fmt <- "--location --fail --header \"Authorization: token %s\"" extra <- sprintf(fmt, token) @@ -951,8 +950,14 @@ local({ } renv_bootstrap_validate_version_dev <- function(version, description) { + expected <- description[["RemoteSha"]] - is.character(expected) && startswith(expected, version) + if (!is.character(expected)) + return(FALSE) + + pattern <- sprintf("^\\Q%s\\E", version) + grepl(pattern, expected, perl = TRUE) + } renv_bootstrap_validate_version_release <- function(version, description) { @@ -1132,10 +1137,10 @@ local({ renv_bootstrap_exec <- function(project, libpath, version) { if (!renv_bootstrap_load(project, libpath, version)) - renv_bootstrap_run(version, libpath) + renv_bootstrap_run(project, libpath, version) } - renv_bootstrap_run <- function(version, libpath) { + renv_bootstrap_run <- function(project, libpath, version) { # perform bootstrap bootstrap(version, libpath) @@ -1146,7 +1151,7 @@ local({ # try again to load if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) { - return(renv::load(project = getwd())) + return(renv::load(project = project)) } # failed to download or load renv; warn the user @@ -1192,98 +1197,101 @@ local({ jsonlite::fromJSON(txt = text, simplifyVector = FALSE) } - renv_json_read_default <- function(file = NULL, text = NULL) { - - # find strings in the JSON - text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") - pattern <- '["](?:(?:\\\\.)|(?:[^"\\\\]))*?["]' - locs <- gregexpr(pattern, text, perl = TRUE)[[1]] - - # if any are found, replace them with placeholders - replaced <- text - strings <- character() - replacements <- character() - - if (!identical(c(locs), -1L)) { - - # get the string values - starts <- locs - ends <- locs + attr(locs, "match.length") - 1L - strings <- substring(text, starts, ends) - - # only keep those requiring escaping - strings <- grep("[[\\]{}:]", strings, perl = TRUE, value = TRUE) - - # compute replacements - replacements <- sprintf('"\032%i\032"', seq_along(strings)) - - # replace the strings - mapply(function(string, replacement) { - replaced <<- sub(string, replacement, replaced, fixed = TRUE) - }, strings, replacements) + renv_json_read_patterns <- function() { + + list( + + # objects + list("{", "\t\n\tobject(\t\n\t"), + list("}", "\t\n\t)\t\n\t"), + + # arrays + list("[", "\t\n\tarray(\t\n\t"), + list("]", "\n\t\n)\n\t\n"), + + # maps + list(":", "\t\n\t=\t\n\t") + + ) + + } + renv_json_read_envir <- function() { + + envir <- new.env(parent = emptyenv()) + + envir[["+"]] <- `+` + envir[["-"]] <- `-` + + envir[["object"]] <- function(...) { + result <- list(...) + names(result) <- as.character(names(result)) + result } - - # transform the JSON into something the R parser understands - transformed <- replaced - transformed <- gsub("{}", "`names<-`(list(), character())", transformed, fixed = TRUE) - transformed <- gsub("[[{]", "list(", transformed, perl = TRUE) - transformed <- gsub("[]}]", ")", transformed, perl = TRUE) - transformed <- gsub(":", "=", transformed, fixed = TRUE) - text <- paste(transformed, collapse = "\n") - - # parse it - json <- parse(text = text, keep.source = FALSE, srcfile = NULL)[[1L]] - - # construct map between source strings, replaced strings - map <- as.character(parse(text = strings)) - names(map) <- as.character(parse(text = replacements)) - - # convert to list - map <- as.list(map) - - # remap strings in object - remapped <- renv_json_read_remap(json, map) - - # evaluate - eval(remapped, envir = baseenv()) - + + envir[["array"]] <- list + + envir[["true"]] <- TRUE + envir[["false"]] <- FALSE + envir[["null"]] <- NULL + + envir + } - renv_json_read_remap <- function(json, map) { - - # fix names - if (!is.null(names(json))) { - lhs <- match(names(json), names(map), nomatch = 0L) - rhs <- match(names(map), names(json), nomatch = 0L) - names(json)[rhs] <- map[lhs] + renv_json_read_remap <- function(object, patterns) { + + # repair names if necessary + if (!is.null(names(object))) { + + nms <- names(object) + for (pattern in patterns) + nms <- gsub(pattern[[2L]], pattern[[1L]], nms, fixed = TRUE) + names(object) <- nms + } - - # fix values - if (is.character(json)) - return(map[[json]] %||% json) - - # handle true, false, null - if (is.name(json)) { - text <- as.character(json) - if (text == "true") - return(TRUE) - else if (text == "false") - return(FALSE) - else if (text == "null") - return(NULL) + + # repair strings if necessary + if (is.character(object)) { + for (pattern in patterns) + object <- gsub(pattern[[2L]], pattern[[1L]], object, fixed = TRUE) } + + # recurse for other objects + if (is.recursive(object)) + for (i in seq_along(object)) + object[i] <- list(renv_json_read_remap(object[[i]], patterns)) + + # return remapped object + object + + } - # recurse - if (is.recursive(json)) { - for (i in seq_along(json)) { - json[i] <- list(renv_json_read_remap(json[[i]], map)) - } - } + renv_json_read_default <- function(file = NULL, text = NULL) { - json + # read json text + text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") + + # convert into something the R parser will understand + patterns <- renv_json_read_patterns() + transformed <- text + for (pattern in patterns) + transformed <- gsub(pattern[[1L]], pattern[[2L]], transformed, fixed = TRUE) + + # parse it + rfile <- tempfile("renv-json-", fileext = ".R") + on.exit(unlink(rfile), add = TRUE) + writeLines(transformed, con = rfile) + json <- parse(rfile, keep.source = FALSE, srcfile = NULL)[[1L]] + # evaluate in safe environment + result <- eval(json, envir = renv_json_read_envir()) + + # fix up strings if necessary + renv_json_read_remap(result, patterns) + } + # load the renv profile, if any renv_bootstrap_profile_load(project)