From 333ef029a9691ae9ca4eebe31681b354faa160a9 Mon Sep 17 00:00:00 2001 From: yenjia Date: Mon, 25 Sep 2023 11:15:24 +0800 Subject: [PATCH] Add a keyword argument to modify the `level` --- wsi_preprocessing/slides.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/wsi_preprocessing/slides.py b/wsi_preprocessing/slides.py index b5a721e..c3a2c87 100644 --- a/wsi_preprocessing/slides.py +++ b/wsi_preprocessing/slides.py @@ -14,7 +14,7 @@ def list_slides(slides_dir, glob_pattern="*.svs"): return slides -def save_slides_mpp_otsu(slides, csv_fname, mpp_key="openslide.mpp-x"): +def save_slides_mpp_otsu(slides, csv_fname, mpp_key="openslide.mpp-x", level=2): d = {} d["slide_path"] = [] @@ -34,7 +34,7 @@ def save_slides_mpp_otsu(slides, csv_fname, mpp_key="openslide.mpp-x"): print(f"- finding slide resolution") - vi = utils.read_image(file, access="sequential", level=2) + vi = utils.read_image(file, access="sequential", level=level) try: # TODO: generalize the mpp_key?