lint

Author: lucidrains

alphafold3_pytorch/alphafold3.py

@@ -3053,8 +3053,8 @@ def __init__(
     @typecheck
     def _calculate_bin_centers(
         self,
-        breaks: Float['breaks'],
-    ) -> Float['breaks+1']:
+        breaks: Float[' breaks'],
+    ) -> Float[' breaks+1']:
         """
         Args:
             breaks: [num_bins -1] bin edges
@@ -3083,7 +3083,6 @@ def forward(
         ptm_residue_weight: Float['b n'] | None = None,
         multimer_mode: bool=True,
     ):
-        device = asym_id.device
         plddt = self.compute_plddt(confidence_head_logits.plddt)
 
         # Section 5.9.1 equation 17
@@ -3123,9 +3122,6 @@ def compute_ptm(
         interface: bool = False,
         compute_chain_wise_iptm: bool = False,
     ):
-
-        device = logits.device
-
         if not exists(residue_weights):
             residue_weights = torch.ones_like(has_frame)
 

alphafold3_pytorch/inputs.py

@@ -38,6 +38,7 @@
 )
 from alphafold3_pytorch.data import mmcif_parsing
 from alphafold3_pytorch.data.data_pipeline import get_assembly
+from alphafold3_pytorch.data.weighted_pdb_sampler import WeightedPDBSampler
 
 from alphafold3_pytorch.life import (
     ATOM_BONDS,

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "alphafold3-pytorch"
-version = "0.2.47"
+version = "0.2.48"
 description = "Alphafold 3 - Pytorch"
 authors = [
     { name = "Phil Wang", email = "[email protected]" }