Update cluster_pdb_train_mmcifs.py (#130)

amorehead · web-flow · commit be10aad492d0 · 2024-08-04T07:02:09.000-07:00
diff --git a/scripts/cluster_pdb_train_mmcifs.py b/scripts/cluster_pdb_train_mmcifs.py
@@ -398,7 +398,7 @@ def cluster_sequences_using_mmseqs2(
     output_db_filepath = os.path.join(output_dir, molecule_type, f"DB_{molecule_type}")
     tmp_output_dir = os.path.join(output_dir, molecule_type, "tmp")
     output_cluster_filepath = os.path.join(
-        args.output_dir, molecule_type, f"DB_{molecule_type}_cluster.tsv"
+        output_dir, molecule_type, f"DB_{molecule_type}_cluster.tsv"
     )
     os.makedirs(os.path.join(output_dir, molecule_type), exist_ok=True)
 

Original file line number	Diff line number	Diff line change
`@@ -398,7 +398,7 @@ def cluster_sequences_using_mmseqs2(`
`398`	`398`	`output_db_filepath = os.path.join(output_dir, molecule_type, f"DB_{molecule_type}")`
`399`	`399`	`tmp_output_dir = os.path.join(output_dir, molecule_type, "tmp")`
`400`	`400`	`output_cluster_filepath = os.path.join(`
`401`		`- args.output_dir, molecule_type, f"DB_{molecule_type}_cluster.tsv"`
	`401`	`+ output_dir, molecule_type, f"DB_{molecule_type}_cluster.tsv"`
`402`	`402`	`)`
`403`	`403`	`os.makedirs(os.path.join(output_dir, molecule_type), exist_ok=True)`
`404`	`404`