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lines changed Original file line number Diff line number Diff line change @@ -141,8 +141,8 @@ from alphafold3_pytorch import (
141141contrived_protein = ' AG'
142142
143143mock_atompos = [
144- torch.randn(6 , 3 ), # alanine has 6 non-hydrogen atoms
145- torch.randn(5 , 3 ) # glycine has 5 non-hydrogen atoms
144+ torch.randn(5 , 3 ), # alanine has 6 non-hydrogen atoms
145+ torch.randn(4 , 3 ) # glycine has 5 non-hydrogen atoms
146146]
147147
148148train_alphafold3_input = Alphafold3Input(
@@ -193,7 +193,7 @@ batched_eval_atom_input = alphafold3_inputs_to_batched_atom_input(eval_alphafold
193193alphafold3.eval()
194194sampled_atom_pos = alphafold3(** batched_eval_atom_input.dict())
195195
196- assert sampled_atom_pos.shape == (1 , (6 + 5 ), 3 )
196+ assert sampled_atom_pos.shape == (1 , (5 + 4 ), 3 )
197197```
198198
199199## Data preparation
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