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use greedy scheduler in CI
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.github/workflows/ci.yml

Lines changed: 2 additions & 2 deletions
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@@ -22,11 +22,11 @@ jobs:
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- name: Install aggiedown in R environment
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shell: bash -l {0}
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run: |
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snakemake -j 1 --use-conda --conda-frontend mamba install_deps
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snakemake -j 1 --schedule greedy --use-conda --conda-frontend mamba install_deps
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- name: Run pipeline
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shell: bash -l {0}
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run: |
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snakemake -j 1 --use-conda --conda-frontend mamba
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snakemake -j 1 --schedule greedy --use-conda --conda-frontend mamba
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- name: upload PDF to GH artifacts
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uses: actions/upload-artifact@v1
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with:

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